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Items 1 - 20 of 326
of 17Next
1:

Vertebrate gene finding from multiple-species alignments using a two-level strategy.

Carter D, Durbin R.

Genome Biol. 2006;7 Suppl 1:S6.1-12. Epub 2006 Aug 7.

PMID: 16925840 [PubMed - indexed for MEDLINE]

2:

Using ESTs to improve the accuracy of de novo gene prediction.

Wei C, Brent MR.

BMC Bioinformatics. 2006 Jul 3;7:327.

PMID: 16817966 [PubMed - indexed for MEDLINE]

3:

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline.

Arumugam M, Wei C, Brown RH, Brent MR.

Genome Biol. 2006;7 Suppl 1:S5.1-10. Epub 2006 Aug 7.

PMID: 16925839 [PubMed - indexed for MEDLINE]

4:

The Gene-Finder computer tools for analysis of human and model organisms genome sequences.

Solovyev V, Salamov A.

Proc Int Conf Intell Syst Mol Biol. 1997;5:294-302.

PMID: 9322052 [PubMed - indexed for MEDLINE]

5:

AceView: a comprehensive cDNA-supported gene and transcripts annotation.

Thierry-Mieg D, Thierry-Mieg J.

Genome Biol. 2006;7 Suppl 1:S12.1-14. Epub 2006 Aug 7.

PMID: 16925834 [PubMed - indexed for MEDLINE]

6:

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome.

Stanke M, Tzvetkova A, Morgenstern B.

Genome Biol. 2006;7 Suppl 1:S11.1-8. Epub 2006 Aug 7.

PMID: 16925833 [PubMed - indexed for MEDLINE]

7:

Gene structure prediction and alternative splicing analysis using genomically aligned ESTs.

Kan Z, Rouchka EC, Gish WR, States DJ.

Genome Res. 2001 May;11(5):889-900.

PMID: 11337482 [PubMed - indexed for MEDLINE]

8:

SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model.

Alexandersson M, Cawley S, Pachter L.

Genome Res. 2003 Mar;13(3):496-502.

PMID: 12618381 [PubMed - indexed for MEDLINE]

9:

Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA.

Djebali S, Delaplace F, Crollius HR.

Genome Biol. 2006;7 Suppl 1:S7.1-10. Epub 2006 Aug 7.

PMID: 16925841 [PubMed - indexed for MEDLINE]

10:

Using multiple alignments to improve gene prediction.

Gross SS, Brent MR.

J Comput Biol. 2006 Mar;13(2):379-93.

PMID: 16597247 [PubMed - indexed for MEDLINE]

11:

Automatic annotation of eukaryotic genes, pseudogenes and promoters.

Solovyev V, Kosarev P, Seledsov I, Vorobyev D.

Genome Biol. 2006;7 Suppl 1:S10.1-12. Epub 2006 Aug 7.

PMID: 16925832 [PubMed - indexed for MEDLINE]

12:

Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.

Coghlan A, Durbin R.

Bioinformatics. 2007 Jun 15;23(12):1468-75. Epub 2007 May 5.

PMID: 17483502 [PubMed - indexed for MEDLINE]

13:

Integrating alternative splicing detection into gene prediction.

Foissac S, Schiex T.

BMC Bioinformatics. 2005 Feb 10;6:25.

PMID: 15705189 [PubMed - indexed for MEDLINE]

14:

Ab initio gene finding in Drosophila genomic DNA.

Salamov AA, Solovyev VV.

Genome Res. 2000 Apr;10(4):516-22.

PMID: 10779491 [PubMed - indexed for MEDLINE]

15:

Improving the specificity of exon prediction using comparative genomics.

Wu J.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S13.

PMID: 18831778 [PubMed - indexed for MEDLINE]

16:

CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction.

Gross SS, Do CB, Sirota M, Batzoglou S.

Genome Biol. 2007;8(12):R269.

PMID: 18096039 [PubMed - indexed for MEDLINE]

17:

Prediction of complete gene structures in human genomic DNA.

Burge C, Karlin S.

J Mol Biol. 1997 Apr 25;268(1):78-94.

PMID: 9149143 [PubMed - indexed for MEDLINE]

18:

NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.

Rambaldi D, Guffanti A, Morandi P, Cassata G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S22.

PMID: 16351749 [PubMed - indexed for MEDLINE]

19:

EGASP: the human ENCODE Genome Annotation Assessment Project.

Guigó R, Flicek P, Abril JF, Reymond A, Lagarde J, Denoeud F, Antonarakis S, Ashburner M, Bajic VB, Birney E, Castelo R, Eyras E, Ucla C, Gingeras TR, Harrow J, Hubbard T, Lewis SE, Reese MG.

Genome Biol. 2006;7 Suppl 1:S2.1-31. Epub 2006 Aug 7. Review.

PMID: 16925836 [PubMed - indexed for MEDLINE]

20:

Mulan: multiple-sequence local alignment and visualization for studying function and evolution.

Ovcharenko I, Loots GG, Giardine BM, Hou M, Ma J, Hardison RC, Stubbs L, Miller W.

Genome Res. 2005 Jan;15(1):184-94. Epub 2004 Dec 8.

PMID: 15590941 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 326
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