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1:

The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins.

Adachi J, Kumar C, Zhang Y, Olsen JV, Mann M.

Genome Biol. 2006;7(9):R80.

PMID: 16948836 [PubMed - indexed for MEDLINE]

2:

Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors.

de Souza GA, Godoy LM, Mann M.

Genome Biol. 2006;7(8):R72. Epub 2006 Aug 10.

PMID: 16901338 [PubMed - indexed for MEDLINE]

3:

Pox proteomics: mass spectrometry analysis and identification of Vaccinia virion proteins.

Yoder JD, Chen TS, Gagnier CR, Vemulapalli S, Maier CS, Hruby DE.

Virol J. 2006 Mar 1;3:10.

PMID: 16509968 [PubMed - indexed for MEDLINE]

4:

Nano-high-performance liquid chromatography in combination with nano-electrospray ionization Fourier transform ion-cyclotron resonance mass spectrometry for proteome analysis.

Ihling C, Berger K, Höfliger MM, Führer D, Beck-Sickinger AG, Sinz A.

Rapid Commun Mass Spectrom. 2003;17(12):1240-6.

PMID: 12811746 [PubMed - indexed for MEDLINE]

5:

Different techniques for urinary protein analysis of normal and lung cancer patients.

Tantipaiboonwong P, Sinchaikul S, Sriyam S, Phutrakul S, Chen ST.

Proteomics. 2005 Mar;5(4):1140-9.

PMID: 15693063 [PubMed - indexed for MEDLINE]

6:

A reference map of a human pituitary adenoma proteome.

Zhan X, Desiderio DM.

Proteomics. 2003 May;3(5):699-713.

PMID: 12748949 [PubMed - indexed for MEDLINE]

7:

High-throughput analysis of rat liver plasma membrane proteome by a nonelectrophoretic in-gel tryptic digestion coupled with mass spectrometry identification.

Cao R, He Q, Zhou J, He Q, Liu Z, Wang X, Chen P, Xie J, Liang S.

J Proteome Res. 2008 Feb;7(2):535-45. Epub 2008 Jan 1.

PMID: 18166008 [PubMed - indexed for MEDLINE]

8:

Proteome analysis of gelatin-bound urinary proteins from patients with bladder cancers.

Saito M, Kimoto M, Araki T, Shimada Y, Fujii R, Oofusa K, Hide M, Usui T, Yoshizato K.

Eur Urol. 2005 Nov;48(5):865-71.

PMID: 15964125 [PubMed - indexed for MEDLINE]

9:

Liquid chromatography MALDI MS/MS for membrane proteome analysis.

Zhang N, Li N, Li L.

J Proteome Res. 2004 Jul-Aug;3(4):719-27.

PMID: 15359724 [PubMed - indexed for MEDLINE]

10:

Evaluation of shotgun sequencing for proteomic analysis of human plasma using HPLC coupled with either ion trap or Fourier transform mass spectrometry.

Wu SL, Choudhary G, Ramström M, Bergquist J, Hancock WS.

J Proteome Res. 2003 Jul-Aug;2(4):383-93.

PMID: 12938928 [PubMed - indexed for MEDLINE]

11:

A high confidence, manually validated human blood plasma protein reference set.

Schenk S, Schoenhals GJ, de Souza G, Mann M.

BMC Med Genomics. 2008 Sep 15;1:41.

PMID: 18793429 [PubMed - in process]

12:

Utility of electrophoretically derived protein mass estimates as additional constraints in proteome analysis of human serum based on MS/MS analysis.

Kim JY, Lee JH, Park GW, Cho K, Kwon KH, Park YM, Cho SY, Paik YK, Yoo JS.

Proteomics. 2005 Aug;5(13):3376-85.

PMID: 16052618 [PubMed - indexed for MEDLINE]

13:

Characterization of the human urinary proteome: a method for high-resolution display of urinary proteins on two-dimensional electrophoresis gels with a yield of nearly 1400 distinct protein spots.

Pieper R, Gatlin CL, McGrath AM, Makusky AJ, Mondal M, Seonarain M, Field E, Schatz CR, Estock MA, Ahmed N, Anderson NG, Steiner S.

Proteomics. 2004 Apr;4(4):1159-74.

PMID: 15048996 [PubMed - indexed for MEDLINE]

14:

Large-scale and high-confidence proteomic analysis of human seminal plasma.

Pilch B, Mann M.

Genome Biol. 2006;7(5):R40. Epub 2006 May 18.

PMID: 16709260 [PubMed - indexed for MEDLINE]

16:

Large-scale identification of proteins in human salivary proteome by liquid chromatography/mass spectrometry and two-dimensional gel electrophoresis-mass spectrometry.

Hu S, Xie Y, Ramachandran P, Ogorzalek Loo RR, Li Y, Loo JA, Wong DT.

Proteomics. 2005 Apr;5(6):1714-28.

PMID: 15800970 [PubMed - indexed for MEDLINE]

17:

Industrial-scale proteomics: from liters of plasma to chemically synthesized proteins.

Rose K, Bougueleret L, Baussant T, Böhm G, Botti P, Colinge J, Cusin I, Gaertner H, Gleizes A, Heller M, Jimenez S, Johnson A, Kussmann M, Menin L, Menzel C, Ranno F, Rodriguez-Tomé P, Rogers J, Saudrais C, Villain M, Wetmore D, Bairoch A, Hochstrasser D.

Proteomics. 2004 Jul;4(7):2125-50.

PMID: 15221774 [PubMed - indexed for MEDLINE]

18:

A dataset of human fetal liver proteome identified by subcellular fractionation and multiple protein separation and identification technology.

Ying W, Jiang Y, Guo L, Hao Y, Zhang Y, Wu S, Zhong F, Wang J, Shi R, Li D, Wan P, Li X, Wei H, Li J, Wang Z, Xue X, Cai Y, Zhu Y, Qian X, He F.

Mol Cell Proteomics. 2006 Sep;5(9):1703-7. Epub 2006 Jun 30.

PMID: 16815949 [PubMed - indexed for MEDLINE]

19:

Enrichment of the basic/cationic urinary proteome using ion exchange chromatography and batch adsorption.

Thongboonkerd V, Semangoen T, Chutipongtanate S.

J Proteome Res. 2007 Mar;6(3):1209-14. Epub 2007 Jan 24.

PMID: 17249711 [PubMed - indexed for MEDLINE]

20:

Between-gel reproducibility of the human cerebrospinal fluid proteome.

Terry DE, Desiderio DM.

Proteomics. 2003 Oct;3(10):1962-79.

PMID: 14625859 [PubMed - indexed for MEDLINE]

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