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Irizarry RA, Cope LM, Wu Z.

Genome Biol. 2006;7(8):404.

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A reanalysis of a published Affymetrix GeneChip control dataset.

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Genome Biol. 2006;7(3):401. Epub 2006 Mar 22.

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Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset.

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Expression profiling using affymetrix genechip probe arrays.

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Contrast normalization of oligonucleotide arrays.

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An overview of image-processing methods for Affymetrix GeneChips.

Arteaga-Salas JM, Zuzan H, Langdon WB, Upton GJ, Harrison AP.

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The effect of GeneChip gene definitions on the microarray study of cancers.

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Libaffy: software for processing Affymetrix GeneChip data.

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Genomic analysis of early murine mammary gland development using novel probe-level algorithms.

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Alternative mRNA polyadenylation can potentially affect detection of gene expression by affymetrix genechip arrays.

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