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Items 1 - 20 of 123
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1:

Leaner and meaner genomes in Escherichia coli.

Ussery DW.

Genome Biol. 2006;7(10):237. Epub 2006 Oct 24.

PMID: 17076878 [PubMed - indexed for MEDLINE]

2:

Emergent properties of reduced-genome Escherichia coli.

Pósfai G, Plunkett G 3rd, Fehér T, Frisch D, Keil GM, Umenhoffer K, Kolisnychenko V, Stahl B, Sharma SS, de Arruda M, Burland V, Harcum SW, Blattner FR.

Science. 2006 May 19;312(5776):1044-6. Epub 2006 Apr 27.

PMID: 16645050 [PubMed - indexed for MEDLINE]

3:

The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12.

Baba T, Huan HC, Datsenko K, Wanner BL, Mori H.

Methods Mol Biol. 2008;416:183-94.

PMID: 18392968 [PubMed - indexed for MEDLINE]

4:

The nature and dynamics of bacterial genomes.

Ochman H, Davalos LM.

Science. 2006 Mar 24;311(5768):1730-3. Review.

PMID: 16556833 [PubMed - indexed for MEDLINE]

5:

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.

Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL.

Nucleic Acids Res. 2006 Jan 5;34(1):1-9. Print 2006.

PMID: 16397293 [PubMed - indexed for MEDLINE]

6:

Multidimensional annotation of the Escherichia coli K-12 genome.

Karp PD, Keseler IM, Shearer A, Latendresse M, Krummenacker M, Paley SM, Paulsen I, Collado-Vides J, Gama-Castro S, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spínola MI, Bonavides-Martinez C, Ingraham J.

Nucleic Acids Res. 2007;35(22):7577-90. Epub 2007 Oct 16.

PMID: 17940092 [PubMed - indexed for MEDLINE]

7:

Do different surrogate methods detect lateral genetic transfer events of different relative ages?

Ragan MA, Harlow TJ, Beiko RG.

Trends Microbiol. 2006 Jan;14(1):4-8. Epub 2005 Dec 13.

PMID: 16356716 [PubMed - indexed for MEDLINE]

8:

EchoBASE: an integrated post-genomic database for Escherichia coli.

Misra RV, Horler RS, Reindl W, Goryanin II, Thomas GH.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D329-33.

PMID: 15608209 [PubMed - indexed for MEDLINE]

9:

Comparative analysis of methodologies for the detection of horizontally transferred genes: a reassessment of first-order Markov models.

Cortez DQ, Lazcano A, Becerra A.

In Silico Biol. 2005;5(5-6):581-92.

PMID: 16610135 [PubMed - indexed for MEDLINE]

10:

New targets for the cyclic AMP receptor protein in the Escherichia coli K-12 genome.

Hollands K, Busby SJ, Lloyd GS.

FEMS Microbiol Lett. 2007 Sep;274(1):89-94. Epub 2007 Jun 30.

PMID: 17608696 [PubMed - indexed for MEDLINE]

11:

Sequence periodicity of Escherichia coli is concentrated in intergenic regions.

Hosid S, Trifonov EN, Bolshoy A.

BMC Mol Biol. 2004 Aug 26;5:14.

PMID: 15333140 [PubMed - indexed for MEDLINE]

12:

Genome-wide screening of genes affecting glycogen metabolism in Escherichia coli K-12.

Eydallin G, Viale AM, Morán-Zorzano MT, Muñoz FJ, Montero M, Baroja-Fernández E, Pozueta-Romero J.

FEBS Lett. 2007 Jun 26;581(16):2947-53. Epub 2007 May 25.

PMID: 17543954 [PubMed - indexed for MEDLINE]

13:

The plasticity of global proteome and genome expression analyzed in closely related W3110 and MG1655 strains of a well-studied model organism, Escherichia coli-K12.

Vijayendran C, Polen T, Wendisch VF, Friehs K, Niehaus K, Flaschel E.

J Biotechnol. 2007 Mar 10;128(4):747-61. Epub 2007 Jan 14.

PMID: 17331609 [PubMed - indexed for MEDLINE]

14:

GenomeViz: visualizing microbial genomes.

Ghai R, Hain T, Chakraborty T.

BMC Bioinformatics. 2004 Dec 15;5:198.

PMID: 15601465 [PubMed - indexed for MEDLINE]

15:

Classification of Escherichia coli K-12 ribosome binding sites. An error-control coding model.

May EE, Vouk MA, Bitzer DL.

IEEE Eng Med Biol Mag. 2006 Jan-Feb;25(1):90-7. No abstract available.

PMID: 16485396 [PubMed - indexed for MEDLINE]

16:

A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information.

Feist AM, Henry CS, Reed JL, Krummenacker M, Joyce AR, Karp PD, Broadbelt LJ, Hatzimanikatis V, Palsson BØ.

Mol Syst Biol. 2007;3:121. Epub 2007 Jun 26.

PMID: 17593909 [PubMed - indexed for MEDLINE]

17:

A genomic-scale search for regulatory binding sites in the integration host factor regulon of Escherichia coli K12.

dos Santos MT, Rodrigues PS.

Genet Mol Res. 2005 Dec 30;4(4):783-9.

PMID: 16475126 [PubMed - indexed for MEDLINE]

18:

The Hsp70 chaperone machines of Escherichia coli: a paradigm for the repartition of chaperone functions.

Genevaux P, Georgopoulos C, Kelley WL.

Mol Microbiol. 2007 Nov;66(4):840-57. Epub 2007 Oct 4. Review.

PMID: 17919282 [PubMed - indexed for MEDLINE]

19:

Weak mutators can drive the evolution of fluoroquinolone resistance in Escherichia coli.

Orlén H, Hughes D.

Antimicrob Agents Chemother. 2006 Oct;50(10):3454-6.

PMID: 17005830 [PubMed - indexed for MEDLINE]

20:

Chance and necessity in the evolution of minimal metabolic networks.

Pál C, Papp B, Lercher MJ, Csermely P, Oliver SG, Hurst LD.

Nature. 2006 Mar 30;440(7084):667-70.

PMID: 16572170 [PubMed - indexed for MEDLINE]

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