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Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline.

Luengo Hendriks CL, Keränen SV, Fowlkes CC, Simirenko L, Weber GH, DePace AH, Henriquez C, Kaszuba DW, Hamann B, Eisen MB, Malik J, Sudar D, Biggin MD, Knowles DW.

Genome Biol. 2006;7(12):R123.

PMID: 17184546 [PubMed - indexed for MEDLINE]

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Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics.

Keränen SV, Fowlkes CC, Luengo Hendriks CL, Sudar D, Knowles DW, Malik J, Biggin MD.

Genome Biol. 2006;7(12):R124.

PMID: 17184547 [PubMed - indexed for MEDLINE]

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A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm.

Fowlkes CC, Hendriks CL, Keränen SV, Weber GH, Rübel O, Huang MY, Chatoor S, DePace AH, Simirenko L, Henriquez C, Beaton A, Weiszmann R, Celniker S, Hamann B, Knowles DW, Biggin MD, Eisen MB, Malik J.

Cell. 2008 Apr 18;133(2):364-74.

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A two-step mode of stripe formation in the Drosophila blastoderm requires interactions among primary pair rule genes.

Hartmann C, Taubert H, Jäckle H, Pankratz MJ.

Mech Dev. 1994 Jan;45(1):3-13.

PMID: 8186146 [PubMed - indexed for MEDLINE]

Non-periodic cues generate seven ftz stripes in the Drosophila embryo.

Yu Y, Pick L.

Mech Dev. 1995 Apr;50(2-3):163-75.

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Cytoarchitecture and the patterning of fushi tarazu expression in the Drosophila blastoderm.

Edgar BA, Odell GM, Schubiger G.

Genes Dev. 1987 Dec;1(10):1226-37.

PMID: 3123317 [PubMed - indexed for MEDLINE]

Zygotically active genes that affect the spatial expression of the fushi tarazu segmentation gene during early Drosophila embryogenesis.

Carroll SB, Scott MP.

Cell. 1986 Apr 11;45(1):113-26.

PMID: 3082519 [PubMed - indexed for MEDLINE]

Isolation, structure, and expression of even-skipped: a second pair-rule gene of Drosophila containing a homeo box.

Macdonald PM, Ingham P, Struhl G.

Cell. 1986 Dec 5;47(5):721-34.

PMID: 2877745 [PubMed - indexed for MEDLINE]

Decapentaplegic transcripts are localized along the dorsal-ventral axis of the Drosophila embryo.

St Johnston RD, Gelbart WM.

EMBO J. 1987 Sep;6(9):2785-91.

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Blastoderm-differential and blastoderm-specific genes of Drosophila melanogaster.

Roark M, Mahoney PA, Graham ML, Lengyel JA.

Dev Biol. 1985 Jun;109(2):476-88.

PMID: 2581833 [PubMed - indexed for MEDLINE]

11:

Changes in the pattern of twisted gastrulation gene expression among Drosophila species.

Mason ED, Marsh JL.

J Mol Evol. 1998 Feb;46(2):180-7.

PMID: 9452520 [PubMed - indexed for MEDLINE]

12:

A genetic switch, based on negative regulation, sharpens stripes in Drosophila embryos.

Edgar BA, Odell GM, Schubiger G.

Dev Genet. 1989;10(3):124-42.

PMID: 2500279 [PubMed - indexed for MEDLINE]

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Regulation of expression domains and effects of ectopic expression reveal gap gene-like properties of the linked pdm genes of Drosophila.

Cockerill KA, Billin AN, Poole SJ.

Mech Dev. 1993 May;41(2-3):139-53.

PMID: 8518192 [PubMed - indexed for MEDLINE]

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Quantitative transcript imaging in normal and heat-shocked Drosophila embryos by using high-density oligonucleotide arrays.

Leemans R, Egger B, Loop T, Kammermeier L, He H, Hartmann B, Certa U, Hirth F, Reichert H.

Proc Natl Acad Sci U S A. 2000 Oct 24;97(22):12138-43.

PMID: 11035778 [PubMed - indexed for MEDLINE]

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Dynamic control of positional information in the early Drosophila embryo.

Jaeger J, Surkova S, Blagov M, Janssens H, Kosman D, Kozlov KN, Manu, Myasnikova E, Vanario-Alonso CE, Samsonova M, Sharp DH, Reinitz J.

Nature. 2004 Jul 15;430(6997):368-71.

PMID: 15254541 [PubMed - indexed for MEDLINE]

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Identification of genes expressed during Drosophila melanogaster gastrulation by using subtractive hybridization.

González-Agüero M, Zúñiga A, Pottstock H, Del Pozo T, González M, Cambiazo V.

Gene. 2005 Jan 31;345(2):213-24. Epub 2005 Jan 1.

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Establishment and refinement of segmental pattern in the Drosophila embryo: spatial control of engrailed expression by pair-rule genes.

DiNardo S, O'Farrell PH.

Genes Dev. 1987 Dec;1(10):1212-25.

PMID: 3123316 [PubMed - indexed for MEDLINE]

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Breakdown of abdominal patterning in the Tribolium Kruppel mutant jaws.

Cerny AC, Bucher G, Schröder R, Klingler M.

Development. 2005 Dec;132(24):5353-63. Epub 2005 Nov 9.

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The spatial distribution of a blastoderm stage-specific mRNA from the serendipity locus of Drosophila melanogaster.

James AA, Vincent A.

Dev Biol. 1986 Dec;118(2):474-9.

PMID: 3098598 [PubMed - indexed for MEDLINE]

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Independence of fushi tarazu expression with respect to cellular density in Drosophila embryos.

Sullivan W.

Nature. 1987 May 14-20;327(6118):164-7.

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