Turn recording back on
Boosting with stumps for predicting transcription start sites.
Zhao X, Xuan Z, Zhang MQ.
Genome Biol. 2007;8(2):R17.
PMID: 17274821 [PubMed - indexed for MEDLINE]
Related Articles Free article in PMC
Generic eukaryotic core promoter prediction using structural features of DNA.
Abeel T, Saeys Y, Bonnet E, Rouzé P, Van de Peer Y.
Genome Res. 2008 Feb;18(2):310-23. Epub 2007 Dec 20.
PMID: 18096745 [PubMed - indexed for MEDLINE]
V1R promoters are well conserved and exhibit common putative regulatory motifs.
Stewart R, Lane RP.
BMC Genomics. 2007 Jul 25;8:253.
PMID: 17651493 [PubMed - indexed for MEDLINE]
Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.
Bajic VB, Brent MR, Brown RH, Frankish A, Harrow J, Ohler U, Solovyev VV, Tan SL.
Genome Biol. 2006;7 Suppl 1:S3.1-13. Epub 2006 Aug 7. Review.
PMID: 16925837 [PubMed - indexed for MEDLINE]
Prediction of transcription start sites based on feature selection using AMOSA.
Wang X, Bandyopadhyay S, Xuan Z, Zhao X, Zhang MQ, Zhang X.
Comput Syst Bioinformatics Conf. 2007;6:183-93.
PMID: 17951823 [PubMed - indexed for MEDLINE]
Related Articles
A new systematic computational approach to predicting target genes of transcription factors.
Dai X, He J, Zhao X.
Nucleic Acids Res. 2007;35(13):4433-40. Epub 2007 Jun 18.
PMID: 17576669 [PubMed - indexed for MEDLINE]
[RTPS]
Kasukawa T.
Tanpakushitsu Kakusan Koso. 2004 Dec;49(17 Suppl):2871-6. Review. Japanese. No abstract available.
PMID: 15669269 [PubMed - indexed for MEDLINE]
Inferring combinatorial regulation of transcription in silico.
Blüthgen N, Kiełbasa SM, Herzel H.
Nucleic Acids Res. 2005 Jan 12;33(1):272-9. Print 2005.
PMID: 15647509 [PubMed - indexed for MEDLINE]
Automatic annotation of eukaryotic genes, pseudogenes and promoters.
Solovyev V, Kosarev P, Seledsov I, Vorobyev D.
Genome Biol. 2006;7 Suppl 1:S10.1-12. Epub 2006 Aug 7.
PMID: 16925832 [PubMed - indexed for MEDLINE]
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes.
Makita Y, de Hoon MJ, Danchin A.
BMC Bioinformatics. 2007 Feb 8;8:47.
PMID: 17286872 [PubMed - indexed for MEDLINE]
PromoterExplorer: an effective promoter identification method based on the AdaBoost algorithm.
Xie X, Wu S, Lam KM, Yan H.
Bioinformatics. 2006 Nov 15;22(22):2722-8. Epub 2006 Sep 25.
PMID: 17000749 [PubMed - indexed for MEDLINE]
EnsemPro: an ensemble approach to predicting transcription start sites in human genomic DNA sequences.
Won HH, Kim MJ, Kim S, Kim JW.
Genomics. 2008 Mar;91(3):259-66.
PMID: 18164178 [PubMed - indexed for MEDLINE]
DarkHorse: a method for genome-wide prediction of horizontal gene transfer.
Podell S, Gaasterland T.
Genome Biol. 2007;8(2):R16.
PMID: 17274820 [PubMed - indexed for MEDLINE]
PromAn: an integrated knowledge-based web server dedicated to promoter analysis.
Lardenois A, Chalmel F, Bianchetti L, Sahel JA, Léveillard T, Poch O.
Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W578-83.
PMID: 16845074 [PubMed - indexed for MEDLINE]
Computational detection and location of transcription start sites in mammalian genomic DNA.
Down TA, Hubbard TJ.
Genome Res. 2002 Mar;12(3):458-61.
PMID: 11875034 [PubMed - indexed for MEDLINE]
Analysis of differentially-regulated genes within a regulatory network by GPS genome navigation.
Zwir I, Huang H, Groisman EA.
Bioinformatics. 2005 Nov 15;21(22):4073-83. Epub 2005 Sep 13.
PMID: 16159917 [PubMed - indexed for MEDLINE]
Current bioinformatics tools in genomic biomedical research (Review).
Teufel A, Krupp M, Weinmann A, Galle PR.
Int J Mol Med. 2006 Jun;17(6):967-73. Review.
PMID: 16685403 [PubMed - indexed for MEDLINE]
Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction.
Ohler U.
Nucleic Acids Res. 2006;34(20):5943-50. Epub 2006 Oct 26.
PMID: 17068082 [PubMed - indexed for MEDLINE]
A tiered approach to comparative genomics.
Ptacek T, Sell SM.
Brief Funct Genomic Proteomic. 2005 Jul;4(2):178-85. Review.
PMID: 16102272 [PubMed - indexed for MEDLINE]
Finding functional promoter motifs by computational methods: a word of caution.
Chowdhary R, Wong L, Bajic VB.
Int J Bioinform Res Appl. 2006;2(3):282-8.
PMID: 18048166 [PubMed - indexed for MEDLINE]