Turn recording back on
Quantifying similarity between motifs.
Gupta S, Stamatoyannopoulos JA, Bailey TL, Noble WS.
Genome Biol. 2007;8(2):R24.
PMID: 17324271 [PubMed - indexed for MEDLINE]
Related Articles Free article in PMC
Discovering sequence motifs.
Bailey TL.
Methods Mol Biol. 2008;452:231-51. Review.
PMID: 18566768 [PubMed - indexed for MEDLINE]
Related Articles
GAME: detecting cis-regulatory elements using a genetic algorithm.
Wei Z, Jensen ST.
Bioinformatics. 2006 Jul 1;22(13):1577-84. Epub 2006 Apr 21.
PMID: 16632495 [PubMed - indexed for MEDLINE]
A correlated motif approach for finding short linear motifs from protein interaction networks.
Tan SH, Hugo W, Sung WK, Ng SK.
BMC Bioinformatics. 2006 Nov 16;7:502.
PMID: 17107624 [PubMed - indexed for MEDLINE]
A generic motif discovery algorithm for sequential data.
Jensen KL, Styczynski MP, Rigoutsos I, Stephanopoulos GN.
Bioinformatics. 2006 Jan 1;22(1):21-8. Epub 2005 Oct 27.
PMID: 16257985 [PubMed - indexed for MEDLINE]
Hybrid Gibbs-sampling algorithm for challenging motif discovery: GibbsDST.
Shida K.
Genome Inform. 2006;17(2):3-13.
PMID: 17503374 [PubMed - indexed for MEDLINE]
Improved detection of DNA motifs using a self-organized clustering of familial binding profiles.
Mahony S, Golden A, Smith TJ, Benos PV.
Bioinformatics. 2005 Jun;21 Suppl 1:i283-91.
PMID: 15961468 [PubMed - indexed for MEDLINE]
Genetic Interaction Motif Finding by expectation maximization--a novel statistical model for inferring gene modules from synthetic lethality.
Qi Y, Ye P, Bader JS.
BMC Bioinformatics. 2005 Dec 6;6:288.
PMID: 16332255 [PubMed - indexed for MEDLINE]
A comparative study on computational two-block motif detection: algorithms and applications.
Bi C, Leeder JS, Vyhlidal CA.
Mol Pharm. 2008 Jan-Feb;5(1):3-16. Epub 2007 Dec 13. Review.
PMID: 18076137 [PubMed - indexed for MEDLINE]
An improved Gibbs sampling method for motif discovery via sequence weighting.
Chen X, Jiang T.
Comput Syst Bioinformatics Conf. 2006:239-47.
PMID: 17369642 [PubMed - indexed for MEDLINE]
A greedy strategy for finding motifs from yes-no examples.
Tateishi E, Miyano S.
Pac Symp Biocomput. 1996:599-613.
PMID: 9390261 [PubMed - indexed for MEDLINE]
Transcription factor and microRNA motif discovery: the Amadeus platform and a compendium of metazoan target sets.
Linhart C, Halperin Y, Shamir R.
Genome Res. 2008 Jul;18(7):1180-9. Epub 2008 Apr 14.
PMID: 18411406 [PubMed - indexed for MEDLINE]
Rapid detection of conserved regions in protein sequences using wavelets.
Krishnan A, Li KB, Issac P.
In Silico Biol. 2004;4(2):133-48.
PMID: 15107019 [PubMed - indexed for MEDLINE]
WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approaches.
Romer KA, Kayombya GR, Fraenkel E.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W217-20. Epub 2007 Jun 21.
PMID: 17584794 [PubMed - indexed for MEDLINE]
STOP: searching for transcription factor motifs using gene expression.
Hertzberg L, Izraeli S, Domany E.
Bioinformatics. 2007 Jul 15;23(14):1737-43. Epub 2007 May 8.
PMID: 17488754 [PubMed - indexed for MEDLINE]
EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequences.
Hu J, Yang YD, Kihara D.
BMC Bioinformatics. 2006 Jul 13;7:342.
PMID: 16839417 [PubMed - indexed for MEDLINE]
Finding signals for plant promoters.
Zheng W.
Genomics Proteomics Bioinformatics. 2003 Feb;1(1):68-73.
PMID: 15626335 [PubMed - indexed for MEDLINE]
Finding exact optimal motifs in matrix representation by partitioning.
Leung HC, Chin FY.
Bioinformatics. 2005 Sep 1;21 Suppl 2:ii86-92.
PMID: 16204132 [PubMed - indexed for MEDLINE]
Conservative extraction of over-represented extensible motifs.
Apostolico A, Comin M, Parida L.
Bioinformatics. 2005 Jun;21 Suppl 1:i9-18.
PMID: 15961503 [PubMed - indexed for MEDLINE]
Detection of generic spaced motifs using submotif pattern mining.
Wijaya E, Rajaraman K, Yiu SM, Sung WK.
Bioinformatics. 2007 Jun 15;23(12):1476-85. Epub 2007 May 5.
PMID: 17483509 [PubMed - indexed for MEDLINE]