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Items 1 - 20 of 99
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1:

A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome.

Small KS, Brudno M, Hill MM, Sidow A.

Genome Biol. 2007;8(3):R41.

PMID: 17374142 [PubMed - indexed for MEDLINE]

2:

Assembly of polymorphic genomes: algorithms and application to Ciona savignyi.

Vinson JP, Jaffe DB, O'Neill K, Karlsson EK, Stange-Thomann N, Anderson S, Mesirov JP, Satoh N, Satou Y, Nusbaum C, Birren B, Galagan JE, Lander ES.

Genome Res. 2005 Aug;15(8):1127-35.

PMID: 16077012 [PubMed - indexed for MEDLINE]

3:

Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi.

Kim JH, Waterman MS, Li LM.

Genome Res. 2007 Jul;17(7):1101-10. Epub 2007 Jun 13.

PMID: 17567986 [PubMed - indexed for MEDLINE]

5:

The C. savignyi genetic map and its integration with the reference sequence facilitates insights into chordate genome evolution.

Hill MM, Broman KW, Stupka E, Smith WC, Jiang D, Sidow A.

Genome Res. 2008 Aug;18(8):1369-79. Epub 2008 Jun 2.

PMID: 18519652 [PubMed - indexed for MEDLINE]

6:

Extreme genomic variation in a natural population.

Small KS, Brudno M, Hill MM, Sidow A.

Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5698-703. Epub 2007 Mar 19.

PMID: 17372217 [PubMed - indexed for MEDLINE]

7:

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.

Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, Lee D, Mathewson CA, Olson T, O'connor K, Prabhu AL, Smailus DE, Stott JM, Tsai M, Wye NH, Yang GS, Zhuang J, Holt RA, Putnam NH, Vrebalov J, Giovannoni JJ, Grimwood J, Schmutz J, Rokhsar D, Jones SJ, Marra MA, Tuskan GA, Bohlmann J, Ellis BE, Ritland K, Douglas CJ, Schein JE.

Plant J. 2007 Jun;50(6):1063-78. Epub 2007 May 3.

PMID: 17488239 [PubMed - indexed for MEDLINE]

8:

Inverse correlation of population similarity and introduction date for invasive ascidians.

Silva N, Smith WC.

PLoS ONE. 2008 Jun 25;3(6):e2552.

PMID: 18575620 [PubMed - indexed for MEDLINE]

9:

Minos transposon causes germline transgenesis of the ascidian Ciona savignyi.

Matsuoka T, Awazu S, Satoh N, Sasakura Y.

Dev Growth Differ. 2004 Jun;46(3):249-55.

PMID: 15206956 [PubMed - indexed for MEDLINE]

10:

Shotgun haplotyping: a novel method for surveying allelic sequence variation.

Lindsay SJ, Bonfield JK, Hurles ME.

Nucleic Acids Res. 2005 Oct 12;33(18):e152.

PMID: 16221968 [PubMed - indexed for MEDLINE]

11:

A dataset generator for whole genome shotgun sequencing.

Myers G.

Proc Int Conf Intell Syst Mol Biol. 1999:202-10.

PMID: 10786303 [PubMed - indexed for MEDLINE]

12:

Miniature genome in the marine chordate Oikopleura dioica.

Seo HC, Kube M, Edvardsen RB, Jensen MF, Beck A, Spriet E, Gorsky G, Thompson EM, Lehrach H, Reinhardt R, Chourrout D.

Science. 2001 Dec 21;294(5551):2506. No abstract available. Erratum in: Science 2002 Jan 4;295(5552):45.

PMID: 11752568 [PubMed - indexed for MEDLINE]

13:

Physical map-assisted whole-genome shotgun sequence assemblies.

Warren RL, Varabei D, Platt D, Huang X, Messina D, Yang SP, Kronstad JW, Krzywinski M, Warren WC, Wallis JW, Hillier LW, Chinwalla AT, Schein JE, Siddiqui AS, Marra MA, Wilson RK, Jones SJ.

Genome Res. 2006 Jun;16(6):768-75.

PMID: 16741162 [PubMed - indexed for MEDLINE]

14:

Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.

Schlueter JA, Lin JY, Schlueter SD, Vasylenko-Sanders IF, Deshpande S, Yi J, O'Bleness M, Roe BA, Nelson RT, Scheffler BE, Jackson SA, Shoemaker RC.

BMC Genomics. 2007 Sep 19;8:330.

PMID: 17880721 [PubMed - indexed for MEDLINE]

15:

Tracembler--software for in-silico chromosome walking in unassembled genomes.

Dong Q, Wilkerson MD, Brendel V.

BMC Bioinformatics. 2007 May 9;8:151.

PMID: 17490482 [PubMed - indexed for MEDLINE]

16:

Accuracy assessment of diploid consensus sequences.

Kim JH, Waterman MS, Li LM.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Jan-Mar;4(1):88-97.

PMID: 17277416 [PubMed - indexed for MEDLINE]

17:

Identification and characterization of sea squirt telomerase reverse transcriptase.

Li Y, Yates JA, Chen JJ.

Gene. 2007 Oct 1;400(1-2):16-24. Epub 2007 Jun 5.

PMID: 17601686 [PubMed - indexed for MEDLINE]

18:

Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus.

Desjardins CA, Gundersen-Rindal DE, Hostetler JB, Tallon LJ, Fuester RW, Schatz MC, Pedroni MJ, Fadrosh DW, Haas BJ, Toms BS, Chen D, Nene V.

BMC Microbiol. 2007 Jun 26;7:61.

PMID: 17594494 [PubMed - indexed for MEDLINE]

19:

Sequence determination from overlapping fragments: a simple model of whole-genome shotgun sequencing.

Derrida B, Fink TM.

Phys Rev Lett. 2002 Feb 11;88(6):068106. Epub 2002 Jan 28.

PMID: 11863859 [PubMed - indexed for MEDLINE]

20:

Polymorphism and genomic structure of the A+T-rich region of mitochondrial DNA in the oriental mole cricket, Gryllotalpa Orientalis (Orthoptera: Gryllotalpidae).

Kim I, Cha SY, Kim MA, Lee YS, Lee KS, Choi YS, Hwang JS, Jin BR, Han YS.

Biochem Genet. 2007 Aug;45(7-8):589-610. Epub 2007 Jun 8.

PMID: 17557203 [PubMed - indexed for MEDLINE]

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