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Hammann C, Westhof E.
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Searching genomes for ribozymes and riboswitches.
Genome Biol. 2007;8(4):210. Review.
PMID: 17472738 [PubMed - indexed for MEDLINE]
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Weinberg Z, Barrick JE, Yao Z, Roth A, Kim JN, Gore J, Wang JX, Lee ER, Block KF, Sudarsan N, Neph S, Tompa M, Ruzzo WL, Breaker RR.
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Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline.
Nucleic Acids Res. 2007;35(14):4809-19. Epub 2007 Jul 9.
PMID: 17621584 [PubMed - indexed for MEDLINE]
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Köhler U, Ayre BG, Goodman HM, Haseloff J.
Abstract
Trans-splicing ribozymes for targeted gene delivery.
J Mol Biol. 1999 Feb 5;285(5):1935-50.
PMID: 9925776 [PubMed - indexed for MEDLINE]
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Serganov A, Patel DJ.
Abstract
Ribozymes, riboswitches and beyond: regulation of gene expression without proteins.
Nat Rev Genet. 2007 Oct;8(10):776-90. Epub 2007 Sep 11. Review.
PMID: 17846637 [PubMed - indexed for MEDLINE]
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Laserson U, Gan HH, Schlick T.
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Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs.
Nucleic Acids Res. 2005 Oct 27;33(18):6057-69. Print 2005.
PMID: 16254081 [PubMed - indexed for MEDLINE]
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Edwards TE, Klein DJ, Ferré-D'Amaré AR.
Abstract
Riboswitches: small-molecule recognition by gene regulatory RNAs.
Curr Opin Struct Biol. 2007 Jun;17(3):273-9. Epub 2007 Jun 15. Review.
PMID: 17574837 [PubMed - indexed for MEDLINE]
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Puerta-Fernández E, Romero-López C, Barroso-delJesus A, Berzal-Herranz A.
Abstract
Ribozymes: recent advances in the development of RNA tools.
FEMS Microbiol Rev. 2003 Apr;27(1):75-97. Review.
PMID: 12697343 [PubMed - indexed for MEDLINE]
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Rodionov DA, Vitreschak AG, Mironov AA, Gelfand MS.
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Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?
Nucleic Acids Res. 2003 Dec 1;31(23):6748-57.
PMID: 14627808 [PubMed - indexed for MEDLINE]
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Penchovsky R, Breaker RR.
Abstract
Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes.
Nat Biotechnol. 2005 Nov;23(11):1424-33. Epub 2005 Oct 23.
PMID: 16244657 [PubMed - indexed for MEDLINE]
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Brantl S.
Abstract
Bacterial gene regulation: from transcription attenuation to riboswitches and ribozymes.
Trends Microbiol. 2004 Nov;12(11):473-5.
PMID: 15488385 [PubMed - indexed for MEDLINE]
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Blount KF, Breaker RR.
Abstract
Riboswitches as antibacterial drug targets.
Nat Biotechnol. 2006 Dec;24(12):1558-64. Review.
PMID: 17160062 [PubMed - indexed for MEDLINE]
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Cech TR.
Abstract
Ribozymes, the first 20 years.
Biochem Soc Trans. 2002 Nov;30(Pt 6):1162-6. Review.
PMID: 12440996 [PubMed - indexed for MEDLINE]
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Abreu-Goodger C, Merino E.
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RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W690-2.
PMID: 15980564 [PubMed - indexed for MEDLINE]
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Wakeman CA, Winkler WC, Dann CE 3rd.
Abstract
Structural features of metabolite-sensing riboswitches.
Trends Biochem Sci. 2007 Sep;32(9):415-24. Epub 2007 Aug 30. Review.
PMID: 17764952 [PubMed - indexed for MEDLINE]
15:
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Corbino KA, Barrick JE, Lim J, Welz R, Tucker BJ, Puskarz I, Mandal M, Rudnick ND, Breaker RR.
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Evidence for a second class of S-adenosylmethionine riboswitches and other regulatory RNA motifs in alpha-proteobacteria.
Genome Biol. 2005;6(8):R70. Epub 2005 Aug 1.
PMID: 16086852 [PubMed - indexed for MEDLINE]
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Fedorova O, Su LJ, Pyle AM.
Abstract
Group II introns: highly specific endonucleases with modular structures and diverse catalytic functions.
Methods. 2002 Nov;28(3):323-35. Review.
PMID: 12431436 [PubMed - indexed for MEDLINE]
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Barrick JE, Corbino KA, Winkler WC, Nahvi A, Mandal M, Collins J, Lee M, Roth A, Sudarsan N, Jona I, Wickiser JK, Breaker RR.
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New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control.
Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6421-6. Epub 2004 Apr 19.
PMID: 15096624 [PubMed - indexed for MEDLINE]
18:
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Xiao M, Li T, Yuan X, Shang Y, Wang F, Chen S, Zhang Y.
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A peripheral element assembles the compact core structure essential for group I intron self-splicing.
Nucleic Acids Res. 2005 Aug 12;33(14):4602-11. Print 2005.
PMID: 16100381 [PubMed - indexed for MEDLINE]
19:
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Lilley DM.
Abstract
Structure, folding and mechanisms of ribozymes.
Curr Opin Struct Biol. 2005 Jun;15(3):313-23. Review.
PMID: 15919196 [PubMed - indexed for MEDLINE]
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Piccinelli P, Rosenblad MA, Samuelsson T.
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Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes.
Nucleic Acids Res. 2005 Aug 8;33(14):4485-95. Print 2005.
PMID: 16087735 [PubMed - indexed for MEDLINE]
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