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Items 1 - 20 of 105
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1:

ngLOC: an n-gram-based Bayesian method for estimating the subcellular proteomes of eukaryotes.

King BR, Guda C.

Genome Biol. 2007;8(5):R68.

PMID: 17472741 [PubMed - indexed for MEDLINE]

2:

Euk-PLoc: an ensemble classifier for large-scale eukaryotic protein subcellular location prediction.

Shen HB, Yang J, Chou KC.

Amino Acids. 2007 Jul;33(1):57-67. Epub 2007 Jan 19.

PMID: 17235453 [PubMed - indexed for MEDLINE]

3:

Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers.

Chou KC, Shen HB.

J Proteome Res. 2006 Aug;5(8):1888-97.

PMID: 16889410 [PubMed - indexed for MEDLINE]

4:

Organelle DB: a cross-species database of protein localization and function.

Wiwatwattana N, Kumar A.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D598-604.

PMID: 15608270 [PubMed - indexed for MEDLINE]

5:

Organelle DB: an updated resource of eukaryotic protein localization and function.

Wiwatwattana N, Landau CM, Cope GJ, Harp GA, Kumar A.

Nucleic Acids Res. 2007 Jan;35(Database issue):D810-4. Epub 2006 Nov 27.

PMID: 17130152 [PubMed - indexed for MEDLINE]

6:

Sample preparation project for the subcellular proteome of mouse liver.

Song Y, Hao Y, Sun A, Li T, Li W, Guo L, Yan Y, Geng C, Chen N, Zhong F, Wei H, Jiang Y, He F.

Proteomics. 2006 Oct;6(19):5269-77.

PMID: 16941572 [PubMed - indexed for MEDLINE]

7:

eSLDB: eukaryotic subcellular localization database.

Pierleoni A, Martelli PL, Fariselli P, Casadio R.

Nucleic Acids Res. 2007 Jan;35(Database issue):D208-12. Epub 2006 Nov 15.

PMID: 17108361 [PubMed - indexed for MEDLINE]

8:

MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes.

Zhang Y, Zhang Y, Adachi J, Olsen JV, Shi R, de Souza G, Pasini E, Foster LJ, Macek B, Zougman A, Kumar C, Wisniewski JR, Jun W, Mann M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D771-9. Epub 2006 Nov 7.

PMID: 17090601 [PubMed - indexed for MEDLINE]

9:

Characterisation of organellar proteomes: a guide to subcellular proteomic fractionation and analysis.

Ho E, Hayen A, Wilkins MR.

Proteomics. 2006 Nov;6(21):5746-57.

PMID: 17068763 [PubMed - indexed for MEDLINE]

11:

A question of size: the eukaryotic proteome and the problems in defining it.

Harrison PM, Kumar A, Lang N, Snyder M, Gerstein M.

Nucleic Acids Res. 2002 Mar 1;30(5):1083-90.

PMID: 11861898 [PubMed - indexed for MEDLINE]

12:

Predicting subcellular localization via protein motif co-occurrence.

Scott MS, Thomas DY, Hallett MT.

Genome Res. 2004 Oct;14(10A):1957-66.

PMID: 15466294 [PubMed - indexed for MEDLINE]

13:

Protein subcellular localization prediction based on compartment-specific features and structure conservation.

Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL.

BMC Bioinformatics. 2007 Sep 8;8:330.

PMID: 17825110 [PubMed - indexed for MEDLINE]

14:

Intrinsic unstructuredness and abundance of PEST motifs in eukaryotic proteomes.

Singh GP, Ganapathi M, Sandhu KS, Dash D.

Proteins. 2006 Feb 1;62(2):309-15.

PMID: 16299712 [PubMed - indexed for MEDLINE]

15:

Methods for imaging and analyses of intracellular organelles using fluorescent and luminescent proteins.

Takeuchi M, Ozawa T.

Anal Sci. 2007 Jan;23(1):25-9. Review.

PMID: 17213619 [PubMed - indexed for MEDLINE]

16:

The evolution of eukaryotic cilia and flagella as motile and sensory organelles.

Mitchell DR.

Adv Exp Med Biol. 2007;607:130-40. Review.

PMID: 17977465 [PubMed - indexed for MEDLINE]

17:

Subcellular localization prediction with new protein encoding schemes.

Oğul H, Mumcuoğu EU.

IEEE/ACM Trans Comput Biol Bioinform. 2007 Apr-Jun;4(2):227-32.

PMID: 17473316 [PubMed - indexed for MEDLINE]

18:

FragAnchor: a large-scale predictor of glycosylphosphatidylinositol anchors in eukaryote protein sequences by qualitative scoring.

Poisson G, Chauve C, Chen X, Bergeron A.

Genomics Proteomics Bioinformatics. 2007 May;5(2):121-30.

PMID: 17893077 [PubMed - indexed for MEDLINE]

19:

Use of transcriptomic data to support organelle proteomic analysis.

Marshall WF.

Methods Mol Biol. 2008;432:403-14.

PMID: 18370033 [PubMed - indexed for MEDLINE]

20:

Identifying novel peroxisomal proteins.

Hawkins J, Mahony D, Maetschke S, Wakabayashi M, Teasdale RD, Bodén M.

Proteins. 2007 Nov 15;69(3):606-16.

PMID: 17636571 [PubMed - indexed for MEDLINE]

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