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Items 1 - 20 of 309
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1:

Tilescope: online analysis pipeline for high-density tiling microarray data.

Zhang ZD, Rozowsky J, Lam HY, Du J, Snyder M, Gerstein M.

Genome Biol. 2007;8(5):R81.

PMID: 17501994 [PubMed - indexed for MEDLINE]

2:

ExpressYourself: A modular platform for processing and visualizing microarray data.

Luscombe NM, Royce TE, Bertone P, Echols N, Horak CE, Chang JT, Snyder M, Gerstein M.

Nucleic Acids Res. 2003 Jul 1;31(13):3477-82.

PMID: 12824348 [PubMed - indexed for MEDLINE]

3:

CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.

Xiang Z, Qin ZS, He Y.

Bioinformatics. 2007 Jul 15;23(14):1843-5. Epub 2007 May 7.

PMID: 17485426 [PubMed - indexed for MEDLINE]

4:

ArrayExplorer, a program in Visual Basic for robust and accurate filter cDNA array analysis.

Patriotis PC, Querec TD, Gruver BN, Brown TR, Patriotis C.

Biotechniques. 2001 Oct;31(4):862, 864, 866-8, 870, 872.

PMID: 11680718 [PubMed - indexed for MEDLINE]

5:

WebArray: an online platform for microarray data analysis.

Xia X, McClelland M, Wang Y.

BMC Bioinformatics. 2005 Dec 21;6:306.

PMID: 16371165 [PubMed - indexed for MEDLINE]

6:

RACE: Remote Analysis Computation for gene Expression data.

Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W638-43.

PMID: 15980552 [PubMed - indexed for MEDLINE]

7:

PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments.

Usadel B, Nagel A, Steinhauser D, Gibon Y, Bläsing OE, Redestig H, Sreenivasulu N, Krall L, Hannah MA, Poree F, Fernie AR, Stitt M.

BMC Bioinformatics. 2006 Dec 18;7:535.

PMID: 17176458 [PubMed - indexed for MEDLINE]

8:

RReportGenerator: automatic reports from routine statistical analysis using R.

Raffelsberger W, Krause Y, Moulinier L, Kieffer D, Morand AL, Brino L, Poch O.

Bioinformatics. 2008 Jan 15;24(2):276-8. Epub 2007 Nov 24.

PMID: 18037684 [PubMed - indexed for MEDLINE]

9:

Codelink: an R package for analysis of GE healthcare gene expression bioarrays.

Diez D, Alvarez R, Dopazo A.

Bioinformatics. 2007 May 1;23(9):1168-9. Epub 2007 Mar 7.

PMID: 17344240 [PubMed - indexed for MEDLINE]

10:

ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics.

Chung HJ, Kim M, Park CH, Kim J, Kim JH.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W460-4.

PMID: 15215430 [PubMed - indexed for MEDLINE]

11:

Computational strategies for analyzing data in gene expression microarray experiments.

Aittokallio T, Kurki M, Nevalainen O, Nikula T, West A, Lahesmaa R.

J Bioinform Comput Biol. 2003 Oct;1(3):541-86. Review.

PMID: 15290769 [PubMed - indexed for MEDLINE]

12:

A dynamic, web-accessible resource to process raw microarray scan data into consolidated gene expression values: importance of replication.

Le Meur N, Lamirault G, Bihouée A, Steenman M, Bédrine-Ferran H, Teusan R, Ramstein G, Léger JJ.

Nucleic Acids Res. 2004 Oct 8;32(18):5349-58. Print 2004.

PMID: 15475389 [PubMed - indexed for MEDLINE]

14:

Statistics for ChIP-chip and DNase hypersensitivity experiments on NimbleGen arrays.

Scacheri PC, Crawford GE, Davis S.

Methods Enzymol. 2006;411:270-82. Review.

PMID: 16939795 [PubMed - indexed for MEDLINE]

15:

arrayQCplot: software for checking the quality of microarray data.

Lee EK, Yi SG, Park T.

Bioinformatics. 2006 Sep 15;22(18):2305-7. Epub 2006 Jul 24.

PMID: 16864592 [PubMed - indexed for MEDLINE]

16:

Array-A-Lizer: a serial DNA microarray quality analyzer.

Petri A, Fleckner J, Matthiessen MW.

BMC Bioinformatics. 2004 Feb 9;5:12.

PMID: 15018654 [PubMed - indexed for MEDLINE]

17:

MIDAW: a web tool for statistical analysis of microarray data.

Romualdi C, Vitulo N, Del Favero M, Lanfranchi G.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W644-9.

PMID: 15980553 [PubMed - indexed for MEDLINE]

18:

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB.

Bioinformatics. 2007 Apr 15;23(8):988-97. Epub 2007 Mar 25.

PMID: 17387113 [PubMed - indexed for MEDLINE]

19:

Evaluation of gene expression measurements from commercial microarray platforms.

Tan PK, Downey TJ, Spitznagel EL Jr, Xu P, Fu D, Dimitrov DS, Lempicki RA, Raaka BM, Cam MC.

Nucleic Acids Res. 2003 Oct 1;31(19):5676-84.

PMID: 14500831 [PubMed - indexed for MEDLINE]

20:

Microarray data analysis and mining.

Saviozzi S, Iazzetti G, Caserta E, Guffanti A, Calogero RA.

Methods Mol Med. 2004;94:67-90.

PMID: 14959823 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 309
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