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Items 1 - 20 of 291
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1:

Modular organization in the reductive evolution of protein-protein interaction networks.

Tamames J, Moya A, Valencia A.

Genome Biol. 2007;8(5):R94.

PMID: 17532860 [PubMed - indexed for MEDLINE]

2:

Evolutionary cores of domain co-occurrence networks.

Wuchty S, Almaas E.

BMC Evol Biol. 2005 Mar 23;5(1):24.

PMID: 15788102 [PubMed - indexed for MEDLINE]

3:

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

BMC Genomics. 2008 Jun 30;9:313.

PMID: 18590549 [PubMed - indexed for MEDLINE]

4:

Conservation of the links between gene transcription and chromosomal organization in the highly reduced genome of Buchnera aphidicola.

Viñuelas J, Calevro F, Remond D, Bernillon J, Rahbé Y, Febvay G, Fayard JM, Charles H.

BMC Genomics. 2007 Jun 4;8:143.

PMID: 17547756 [PubMed - indexed for MEDLINE]

5:

Integrated analysis of multiple data sources reveals modular structure of biological networks.

Lu H, Shi B, Wu G, Zhang Y, Zhu X, Zhang Z, Liu C, Zhao Y, Wu T, Wang J, Chen R.

Biochem Biophys Res Commun. 2006 Jun 23;345(1):302-9. Epub 2006 Apr 27.

PMID: 16690033 [PubMed - indexed for MEDLINE]

6:

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

BMC Bioinformatics. 2006 Apr 14;7:207.

PMID: 16613608 [PubMed - indexed for MEDLINE]

7:

A unified representation of multiprotein complex data for modeling interaction networks.

Ding C, He X, Meraz RF, Holbrook SR.

Proteins. 2004 Oct 1;57(1):99-108.

PMID: 15326596 [PubMed - indexed for MEDLINE]

8:

Genome size reduction through multiple events of gene disintegration in Buchnera APS.

Silva FJ, Latorre A, Moya A.

Trends Genet. 2001 Nov;17(11):615-8.

PMID: 11672844 [PubMed - indexed for MEDLINE]

9:

Topology, tinkering and evolution of the human transcription factor network.

Rodriguez-Caso C, Medina MA, Solé RV.

FEBS J. 2005 Dec;272(24):6423-34.

PMID: 16336278 [PubMed - indexed for MEDLINE]

10:

Impacts of protein-protein interaction domains on organism and network complexity.

Xia K, Fu Z, Hou L, Han JD.

Genome Res. 2008 Sep;18(9):1500-8. Epub 2008 Aug 7.

PMID: 18687879 [PubMed - indexed for MEDLINE]

11:

Reductive genome evolution in Buchnera aphidicola.

van Ham RC, Kamerbeek J, Palacios C, Rausell C, Abascal F, Bastolla U, Fernández JM, Jiménez L, Postigo M, Silva FJ, Tamames J, Viguera E, Latorre A, Valencia A, Morán F, Moya A.

Proc Natl Acad Sci U S A. 2003 Jan 21;100(2):581-6. Epub 2003 Jan 9.

PMID: 12522265 [PubMed - indexed for MEDLINE]

12:

Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks.

Agrafioti I, Swire J, Abbott J, Huntley D, Butcher S, Stumpf MP.

BMC Evol Biol. 2005 Mar 18;5(1):23.

PMID: 15777474 [PubMed - indexed for MEDLINE]

13:

Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.

PMID: 17620146 [PubMed - indexed for MEDLINE]

14:

Identification of functional modules in a PPI network by clique percolation clustering.

Zhang S, Ning X, Zhang XS.

Comput Biol Chem. 2006 Dec;30(6):445-51. Epub 2006 Nov 13.

PMID: 17098476 [PubMed - indexed for MEDLINE]

15:

Evidence of interaction network evolution by whole-genome duplications: a case study in MADS-box proteins.

Veron AS, Kaufmann K, Bornberg-Bauer E.

Mol Biol Evol. 2007 Mar;24(3):670-8. Epub 2006 Dec 14.

PMID: 17175526 [PubMed - indexed for MEDLINE]

16:

Comparative interactomics.

Cesareni G, Ceol A, Gavrila C, Palazzi LM, Persico M, Schneider MV.

FEBS Lett. 2005 Mar 21;579(8):1828-33. Review.

PMID: 15763559 [PubMed - indexed for MEDLINE]

17:

Modular organization of protein interaction networks.

Luo F, Yang Y, Chen CF, Chang R, Zhou J, Scheuermann RH.

Bioinformatics. 2007 Jan 15;23(2):207-14. Epub 2006 Nov 8. Erratum in: Bioinformatics. 2007 Apr 1;23(7):916.

PMID: 17092991 [PubMed - indexed for MEDLINE]

18:

High-betweenness proteins in the yeast protein interaction network.

Joy MP, Brock A, Ingber DE, Huang S.

J Biomed Biotechnol. 2005 Jun 30;2005(2):96-103.

PMID: 16046814 [PubMed]

19:

Extreme genome reduction in Buchnera spp.: toward the minimal genome needed for symbiotic life.

Gil R, Sabater-Muñoz B, Latorre A, Silva FJ, Moya A.

Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4454-8. Epub 2002 Mar 19.

PMID: 11904373 [PubMed - indexed for MEDLINE]

20:

Revealing static and dynamic modular architecture of the eukaryotic protein interaction network.

Komurov K, White M.

Mol Syst Biol. 2007;3:110. Epub 2007 Apr 24.

PMID: 17453049 [PubMed - indexed for MEDLINE]

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