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Items 1 - 20 of 112
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1:

Evolutionary history and functional implications of protein domains and their combinations in eukaryotes.

Itoh M, Nacher JC, Kuma K, Goto S, Kanehisa M.

Genome Biol. 2007;8(6):R121.

PMID: 17588271 [PubMed - indexed for MEDLINE]

2:

Novel conserved domains in proteins with predicted roles in eukaryotic cell-cycle regulation, decapping and RNA stability.

Anantharaman V, Aravind L.

BMC Genomics. 2004 Jul 16;5(1):45.

PMID: 15257761 [PubMed - indexed for MEDLINE]

3:

Evolutionary cores of domain co-occurrence networks.

Wuchty S, Almaas E.

BMC Evol Biol. 2005 Mar 23;5(1):24.

PMID: 15788102 [PubMed - indexed for MEDLINE]

4:

Evolution of SET-domain protein families in the unicellular and multicellular Ascomycota fungi.

Veerappan CS, Avramova Z, Moriyama EN.

BMC Evol Biol. 2008 Jul 1;8:190.

PMID: 18593478 [PubMed - indexed for MEDLINE]

5:

Domain combinations in archaeal, eubacterial and eukaryotic proteomes.

Apic G, Gough J, Teichmann SA.

J Mol Biol. 2001 Jul 6;310(2):311-25.

PMID: 11428892 [PubMed - indexed for MEDLINE]

6:

The evolutionary repertoires of the eukaryotic-type ABC transporters in terms of the phylogeny of ATP-binding domains in eukaryotes and prokaryotes.

Igarashi Y, Aoki KF, Mamitsuka H, Kuma K, Kanehisa M.

Mol Biol Evol. 2004 Nov;21(11):2149-60. Epub 2004 Aug 5.

PMID: 15297601 [PubMed - indexed for MEDLINE]

7:

Evolution of protein domain promiscuity in eukaryotes.

Basu MK, Carmel L, Rogozin IB, Koonin EV.

Genome Res. 2008 Mar;18(3):449-61. Epub 2008 Jan 29.

PMID: 18230802 [PubMed - indexed for MEDLINE]

8:

Diversity and evolution of the thyroglobulin type-1 domain superfamily.

Novinec M, Kordis D, Turk V, Lenarcic B.

Mol Biol Evol. 2006 Apr;23(4):744-55. Epub 2005 Dec 20.

PMID: 16368776 [PubMed - indexed for MEDLINE]

9:

The relationship between domain duplication and recombination.

Vogel C, Teichmann SA, Pereira-Leal J.

J Mol Biol. 2005 Feb 11;346(1):355-65. Epub 2004 Dec 23.

PMID: 15663950 [PubMed - indexed for MEDLINE]

10:

Global phylogeny determined by the combination of protein domains in proteomes.

Wang M, Caetano-Anollés G.

Mol Biol Evol. 2006 Dec;23(12):2444-54. Epub 2006 Sep 13.

PMID: 16971695 [PubMed - indexed for MEDLINE]

11:

Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

Anantharaman V, Koonin EV, Aravind L.

J Mol Biol. 2001 Apr 13;307(5):1271-92.

PMID: 11292341 [PubMed - indexed for MEDLINE]

12:

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA.

Genome Biol. 2004;5(2):R7. Epub 2004 Jan 15.

PMID: 14759257 [PubMed - indexed for MEDLINE]

13:

Homologs of eukaryotic Ras superfamily proteins in prokaryotes and their novel phylogenetic correlation with their eukaryotic analogs.

Dong JH, Wen JF, Tian HF.

Gene. 2007 Jul 1;396(1):116-24. Epub 2007 Mar 14.

PMID: 17449198 [PubMed - indexed for MEDLINE]

15:

Origin of multicellular eukaryotes - insights from proteome comparisons.

Aravind L, Subramanian G.

Curr Opin Genet Dev. 1999 Dec;9(6):688-94. Review.

PMID: 10607613 [PubMed - indexed for MEDLINE]

16:

Comparative genomics and structural biology of the molecular innovations of eukaryotes.

Aravind L, Iyer LM, Koonin EV.

Curr Opin Struct Biol. 2006 Jun;16(3):409-19. Epub 2006 May 5. Review.

PMID: 16679012 [PubMed - indexed for MEDLINE]

17:

Identification of the prokaryotic ligand-gated ion channels and their implications for the mechanisms and origins of animal Cys-loop ion channels.

Tasneem A, Iyer LM, Jakobsson E, Aravind L.

Genome Biol. 2005;6(1):R4. Epub 2004 Dec 20.

PMID: 15642096 [PubMed - indexed for MEDLINE]

18:

A molecular timescale of eukaryote evolution and the rise of complex multicellular life.

Hedges SB, Blair JE, Venturi ML, Shoe JL.

BMC Evol Biol. 2004 Jan 28;4:2.

PMID: 15005799 [PubMed - indexed for MEDLINE]

20:

Comparative pair-wise domain-combinations for screening the clade specific domain-architectures in metazoan genomes.

Kawashima S, Kawashima T, Putnam NH, Rokhsar DS, Wada H, Kanehisa M.

Genome Inform. 2007;19:50-60.

PMID: 18546504 [PubMed - indexed for MEDLINE]

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