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Items 1 - 20 of 105
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1:

Housekeeping genes tend to show reduced upstream sequence conservation.

Farré D, Bellora N, Mularoni L, Messeguer X, Albà MM.

Genome Biol. 2007;8(7):R140.

PMID: 17626644 [PubMed - indexed for MEDLINE]

2:

Genes involved in complex adaptive processes tend to have highly conserved upstream regions in mammalian genomes.

Lee S, Kohane I, Kasif S.

BMC Genomics. 2005 Nov 27;6:168.

PMID: 16309559 [PubMed - indexed for MEDLINE]

3:

Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation.

Vardhanabhuti S, Wang J, Hannenhalli S.

Nucleic Acids Res. 2007;35(10):3203-13. Epub 2007 Apr 22.

PMID: 17452354 [PubMed - indexed for MEDLINE]

4:

Identification of highly specific localized sequence motifs in human ribosomal protein gene promoters.

Roepcke S, Zhi D, Vingron M, Arndt PF.

Gene. 2006 Jan 3;365:48-56. Epub 2005 Dec 15.

PMID: 16343812 [PubMed - indexed for MEDLINE]

5:

Structural organization and transcription regulation of nuclear genes encoding the mammalian cytochrome c oxidase complex.

Lenka N, Vijayasarathy C, Mullick J, Avadhani NG.

Prog Nucleic Acid Res Mol Biol. 1998;61:309-44. Review.

PMID: 9752724 [PubMed - indexed for MEDLINE]

6:

All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues.

Rozenberg JM, Shlyakhtenko A, Glass K, Rishi V, Myakishev MV, FitzGerald PC, Vinson C.

BMC Genomics. 2008 Feb 5;9:67.

PMID: 18252004 [PubMed - indexed for MEDLINE]

7:

Isolation of a novel retinoic acid-responsive gene by selection of genomic fragments derived from CpG-island-enriched DNA.

Shago M, Giguére V.

Mol Cell Biol. 1996 Aug;16(8):4337-48.

PMID: 8754834 [PubMed - indexed for MEDLINE]

8:

Identification and cross-species comparison of canine osteoarthritic gene regulatory cis-elements.

Hannenhalli SS, Middleton RP, Levy S, Perroud B, Holzwarth JA, McDonald K, Hannah SS.

Osteoarthritis Cartilage. 2006 Aug;14(8):830-8. Epub 2006 Mar 31.

PMID: 16580849 [PubMed - indexed for MEDLINE]

9:

Identification of estrogen-responsive genes using a genome-wide analysis of promoter elements for transcription factor binding sites.

Kamalakaran S, Radhakrishnan SK, Beck WT.

J Biol Chem. 2005 Jun 3;280(22):21491-7. Epub 2005 Mar 24.

PMID: 15790569 [PubMed - indexed for MEDLINE]

10:

Comparative promoter region analysis powered by CORG.

Dieterich C, Grossmann S, Tanzer A, Röpcke S, Arndt PF, Stadler PF, Vingron M.

BMC Genomics. 2005 Feb 21;6(1):24.

PMID: 15723697 [PubMed - indexed for MEDLINE]

11:

Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs.

Chiba H, Yamashita R, Kinoshita K, Nakai K.

BMC Genomics. 2008 Apr 2;9:152.

PMID: 18384671 [PubMed - indexed for MEDLINE]

12:

Two non-homologous brain diseases-related genes, SERPINI1 and PDCD10, are tightly linked by an asymmetric bidirectional promoter in an evolutionarily conserved manner.

Chen PY, Chang WS, Chou RH, Lai YK, Lin SC, Chi CY, Wu CW.

BMC Mol Biol. 2007 Jan 9;8:2.

PMID: 17212813 [PubMed - indexed for MEDLINE]

13:

The chick and human collagen alpha1(XII) gene promoter--activity of highly conserved regions around the first exon and in the first intron.

Chiquet M, Mumenthaler U, Wittwer M, Jin W, Koch M.

Eur J Biochem. 1998 Oct 15;257(2):362-71.

PMID: 9826181 [PubMed - indexed for MEDLINE]

14:

Structural analysis of the regulatory elements of the type-II procollagen gene. Conservation of promoter and first intron sequences between human and mouse.

Vikkula M, Metsäranta M, Syvänen AC, Ala-Kokko L, Vuorio E, Peltonen L.

Biochem J. 1992 Jul 1;285 ( Pt 1):287-94.

PMID: 1637314 [PubMed - indexed for MEDLINE]

15:

Structural and functional analysis of mouse Msx1 gene promoter: sequence conservation with human MSX1 promoter points at potential regulatory elements.

Gonzalez SM, Ferland LH, Robert B, Abdelhay E.

DNA Cell Biol. 1998 Jun;17(6):561-72.

PMID: 9655249 [PubMed - indexed for MEDLINE]

17:

Dual promoter structure of ZFP106: regulation by myogenin and nuclear respiratory factor-1.

Grasberger H, Ye H, Mashima H, Bell GI.

Gene. 2005 Jan 3;344:143-59. Epub 2004 Nov 19.

PMID: 15656981 [PubMed - indexed for MEDLINE]

18:

Bioinformatic identification of novel putative photoreceptor specific cis-elements.

Danko CG, McIlvain VA, Qin M, Knox BE, Pertsov AM.

BMC Bioinformatics. 2007 Oct 22;8:407.

PMID: 17953763 [PubMed - indexed for MEDLINE]

19:

Structural analysis and characterization of tissue and hormonal responsive expression of the avian bone sialoprotein (BSP) gene.

Yang R, Gerstenfeld LC.

J Cell Biochem. 1997 Jan;64(1):77-93.

PMID: 9015757 [PubMed - indexed for MEDLINE]

20:

Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data.

Huber BR, Bulyk ML.

BMC Bioinformatics. 2006 Apr 27;7:229.

PMID: 16643658 [PubMed - indexed for MEDLINE]

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