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Items 1 - 20 of 103
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1:

Model-based analysis of two-color arrays (MA2C).

Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, Liu JS, Chen R, Liu XS.

Genome Biol. 2007;8(8):R178.

PMID: 17727723 [PubMed - indexed for MEDLINE]

2:

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

PMID: 15807904 [PubMed - indexed for MEDLINE]

3:

Analysis of the quality of contact-pin fabricated oligonucleotide microarrays.

Yang AX, Mejido J, Bhattacharya B, Petersen D, Han J, Kawasaki ES, Puri RK.

Mol Biotechnol. 2006 Nov;34(3):303-15.

PMID: 17284778 [PubMed - indexed for MEDLINE]

4:

Assessing the need for sequence-based normalization in tiling microarray experiments.

Royce TE, Rozowsky JS, Gerstein MB.

Bioinformatics. 2007 Apr 15;23(8):988-97. Epub 2007 Mar 25.

PMID: 17387113 [PubMed - indexed for MEDLINE]

5:

The distribution and deposition algorithm for multiple oligo nucleotide arrays.

Ning K, Leong HW.

Genome Inform. 2006;17(2):89-99.

PMID: 17503382 [PubMed - indexed for MEDLINE]

6:

Identification of a novel cis-regulatory element involved in the heat shock response in Caenorhabditis elegans using microarray gene expression and computational methods.

GuhaThakurta D, Palomar L, Stormo GD, Tedesco P, Johnson TE, Walker DW, Lithgow G, Kim S, Link CD.

Genome Res. 2002 May;12(5):701-12. Erratum in: Genome Res 2002 Aug;12(8):1301.

PMID: 11997337 [PubMed - indexed for MEDLINE]

7:

A genotype calling algorithm for affymetrix SNP arrays.

Rabbee N, Speed TP.

Bioinformatics. 2006 Jan 1;22(1):7-12. Epub 2005 Nov 2.

PMID: 16267090 [PubMed - indexed for MEDLINE]

8:

Transcript normalization and segmentation of tiling array data.

Zeller G, Henz SR, Laubinger S, Weigel D, Rätsch G.

Pac Symp Biocomput. 2008:527-38.

PMID: 18229713 [PubMed - indexed for MEDLINE]

9:

A statistical approach for array CGH data analysis.

Picard F, Robin S, Lavielle M, Vaisse C, Daudin JJ.

BMC Bioinformatics. 2005 Feb 11;6:27.

PMID: 15705208 [PubMed - indexed for MEDLINE]

10:

TileMap: create chromosomal map of tiling array hybridizations.

Ji H, Wong WH.

Bioinformatics. 2005 Sep 15;21(18):3629-36. Epub 2005 Jul 26.

PMID: 16046496 [PubMed - indexed for MEDLINE]

11:

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Bolstad BM, Irizarry RA, Astrand M, Speed TP.

Bioinformatics. 2003 Jan 22;19(2):185-93.

PMID: 12538238 [PubMed - indexed for MEDLINE]

12:

SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data.

Price TS, Regan R, Mott R, Hedman A, Honey B, Daniels RJ, Smith L, Greenfield A, Tiganescu A, Buckle V, Ventress N, Ayyub H, Salhan A, Pedraza-Diaz S, Broxholme J, Ragoussis J, Higgs DR, Flint J, Knight SJ.

Nucleic Acids Res. 2005 Jun 16;33(11):3455-64. Print 2005.

PMID: 15961730 [PubMed - indexed for MEDLINE]

13:

Visualization methods for statistical analysis of microarray clusters.

Hibbs MA, Dirksen NC, Li K, Troyanskaya OG.

BMC Bioinformatics. 2005 May 12;6:115.

PMID: 15890080 [PubMed - indexed for MEDLINE]

14:

Empirical array quality weights in the analysis of microarray data.

Ritchie ME, Diyagama D, Neilson J, van Laar R, Dobrovic A, Holloway A, Smyth GK.

BMC Bioinformatics. 2006 May 19;7:261.

PMID: 16712727 [PubMed - indexed for MEDLINE]

15:

A robust two-way semi-linear model for normalization of cDNA microarray data.

Wang D, Huang J, Xie H, Manzella L, Soares MB.

BMC Bioinformatics. 2005 Jan 21;6:14.

PMID: 15663789 [PubMed - indexed for MEDLINE]

16:

Identification of novel prognostic markers in cervical intraepithelial neoplasia using LDMAS (LOH Data Management and Analysis Software).

Hamoudi RA, El-Hamidi A, Du MQ.

BMC Bioinformatics. 2005 Jan 26;6:18.

PMID: 15673474 [PubMed - indexed for MEDLINE]

17:

Development and implementation of an analysis tool for array-based comparative genomic hybridization.

Kreuz M, Rosolowski M, Berger H, Schwaenen C, Wessendorf S, Loeffler M, Hasenclever D.

Methods Inf Med. 2007;46(5):608-13.

PMID: 17938787 [PubMed - indexed for MEDLINE]

18:

An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reactions.

Pozhitkov A, Stemshorn K, Tautz D.

BMC Bioinformatics. 2005 Nov 29;6:281.

PMID: 16316462 [PubMed - indexed for MEDLINE]

19:

LSimpute: accurate estimation of missing values in microarray data with least squares methods.

Bø TH, Dysvik B, Jonassen I.

Nucleic Acids Res. 2004 Feb 20;32(3):e34.

PMID: 14978222 [PubMed - indexed for MEDLINE]

20:

Can Zipf's law be adapted to normalize microarrays?

Lu T, Costello CM, Croucher PJ, Häsler R, Deuschl G, Schreiber S.

BMC Bioinformatics. 2005 Feb 23;6:37.

PMID: 15727680 [PubMed - indexed for MEDLINE]

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