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Items 1 - 20 of 113
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1:

Functional constraint and small insertions and deletions in the ENCODE regions of the human genome.

Clark TG, Andrew T, Cooper GM, Margulies EH, Mullikin JC, Balding DJ.

Genome Biol. 2007;8(9):R180.

PMID: 17784950 [PubMed - indexed for MEDLINE]

2:

An initial map of insertion and deletion (INDEL) variation in the human genome.

Mills RE, Luttig CT, Larkins CE, Beauchamp A, Tsui C, Pittard WS, Devine SE.

Genome Res. 2006 Sep;16(9):1182-90. Epub 2006 Aug 10.

PMID: 16902084 [PubMed - indexed for MEDLINE]

3:

The genomic landscape of short insertion and deletion polymorphisms in the chicken (Gallus gallus) Genome: a high frequency of deletions in tandem duplicates.

Brandström M, Ellegren H.

Genetics. 2007 Jul;176(3):1691-701. Epub 2007 May 16.

PMID: 17507681 [PubMed - indexed for MEDLINE]

4:

Comparative genomic analysis of human and chimpanzee indicates a key role for indels in primate evolution.

Wetterbom A, Sevov M, Cavelier L, Bergström TF.

J Mol Evol. 2006 Nov;63(5):682-90. Epub 2006 Oct 29.

PMID: 17075697 [PubMed - indexed for MEDLINE]

5:

Sequence context affects the rate of short insertions and deletions in flies and primates.

Tanay A, Siggia ED.

Genome Biol. 2008;9(2):R37. Epub 2008 Feb 21.

PMID: 18291026 [PubMed - indexed for MEDLINE]

6:

Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.

Lunter G.

Bioinformatics. 2007 Jul 1;23(13):i289-96.

PMID: 17646308 [PubMed - indexed for MEDLINE]

7:

Human-specific insertions and deletions inferred from mammalian genome sequences.

Chen FC, Chen CJ, Li WH, Chuang TJ.

Genome Res. 2007 Jan;17(1):16-22. Epub 2006 Nov 9.

PMID: 17095709 [PubMed - indexed for MEDLINE]

8:

Patterns and relative rates of nucleotide and insertion/deletion evolution at six chloroplast intergenic regions in new world species of the Lecythidaceae.

Hamilton MB, Braverman JM, Soria-Hernanz DF.

Mol Biol Evol. 2003 Oct;20(10):1710-21. Epub 2003 Jun 27.

PMID: 12832633 [PubMed - indexed for MEDLINE]

9:

Distribution and intensity of constraint in mammalian genomic sequence.

Cooper GM, Stone EA, Asimenos G; NISC Comparative Sequencing Program, Green ED, Batzoglou S, Sidow A.

Genome Res. 2005 Jul;15(7):901-13. Epub 2005 Jun 17.

PMID: 15965027 [PubMed - indexed for MEDLINE]

10:

Genome-wide identification of human functional DNA using a neutral indel model.

Lunter G, Ponting CP, Hein J.

PLoS Comput Biol. 2006 Jan;2(1):e5. Epub 2006 Jan 13.

PMID: 16410828 [PubMed - indexed for MEDLINE]

11:

Occurrence and consequences of coding sequence insertions and deletions in Mammalian genomes.

Taylor MS, Ponting CP, Copley RR.

Genome Res. 2004 Apr;14(4):555-66.

PMID: 15059996 [PubMed - indexed for MEDLINE]

12:

Evolution of a noncoding region of the chloroplast genome.

Golenberg EM, Clegg MT, Durbin ML, Doebley J, Ma DP.

Mol Phylogenet Evol. 1993 Mar;2(1):52-64.

PMID: 8081547 [PubMed - indexed for MEDLINE]

13:

Insertion-deletion polymorphisms in 3' regions of maize genes occur frequently and can be used as highly informative genetic markers.

Bhattramakki D, Dolan M, Hanafey M, Wineland R, Vaske D, Register JC 3rd, Tingey SV, Rafalski A.

Plant Mol Biol. 2002 Mar-Apr;48(5-6):539-47.

PMID: 12004893 [PubMed - indexed for MEDLINE]

14:

Heterotachy in mammalian promoter evolution.

Taylor MS, Kai C, Kawai J, Carninci P, Hayashizaki Y, Semple CA.

PLoS Genet. 2006 Apr;2(4):e30. Epub 2006 Apr 28.

PMID: 16683025 [PubMed - indexed for MEDLINE]

15:

Meta-analysis of indels causing human genetic disease: mechanisms of mutagenesis and the role of local DNA sequence complexity.

Chuzhanova NA, Anassis EJ, Ball EV, Krawczak M, Cooper DN.

Hum Mutat. 2003 Jan;21(1):28-44.

PMID: 12497629 [PubMed - indexed for MEDLINE]

16:

Patterns and rates of indel evolution in processed pseudogenes from humans and murids.

Ophir R, Graur D.

Gene. 1997 Dec 31;205(1-2):191-202.

PMID: 9461394 [PubMed - indexed for MEDLINE]

17:

Indel PDB: a database of structural insertions and deletions derived from sequence alignments of closely related proteins.

Hsing M, Cherkasov A.

BMC Bioinformatics. 2008 Jun 25;9:293.

PMID: 18578882 [PubMed - indexed for MEDLINE]

18:

Single-nucleotide mutation rate increases close to insertions/deletions in eukaryotes.

Tian D, Wang Q, Zhang P, Araki H, Yang S, Kreitman M, Nagylaki T, Hudson R, Bergelson J, Chen JQ.

Nature. 2008 Sep 4;455(7209):105-8. Epub 2008 Jul 20.

PMID: 18641631 [PubMed - indexed for MEDLINE]

19:

PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data.

Chen K, McLellan MD, Ding L, Wendl MC, Kasai Y, Wilson RK, Mardis ER.

Genome Res. 2007 May;17(5):659-66. Epub 2007 Apr 6.

PMID: 17416743 [PubMed - indexed for MEDLINE]

20:

SSCP-SNP in pearl millet--a new marker system for comparative genetics.

Bertin I, Zhu JH, Gale MD.

Theor Appl Genet. 2005 May;110(8):1467-72. Epub 2005 Apr 5.

PMID: 15809850 [PubMed - indexed for MEDLINE]

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