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1:

Common gene expression strategies revealed by genome-wide analysis in yeast.

García-Martínez J, González-Candelas F, Pérez-Ortín JE.

Genome Biol. 2007;8(10):R222.

PMID: 17945030 [PubMed - indexed for MEDLINE]

2:

From gene networks to gene function.

Schlitt T, Palin K, Rung J, Dietmann S, Lappe M, Ukkonen E, Brazma A.

Genome Res. 2003 Dec;13(12):2568-76.

PMID: 14656964 [PubMed - indexed for MEDLINE]

3:

Modularity of the transcriptional response of protein complexes in yeast.

Simonis N, Gonze D, Orsi C, van Helden J, Wodak SJ.

J Mol Biol. 2006 Oct 20;363(2):589-610. Epub 2006 Jul 3.

PMID: 16973176 [PubMed - indexed for MEDLINE]

4:

Noise minimization in eukaryotic gene expression.

Fraser HB, Hirsh AE, Giaever G, Kumm J, Eisen MB.

PLoS Biol. 2004 Jun;2(6):e137. Epub 2004 Apr 27.

PMID: 15124029 [PubMed - indexed for MEDLINE]

5:

Global mRNA expression analysis in myosin II deficient strains of Saccharomyces cerevisiae reveals an impairment of cell integrity functions.

Rodríguez-Quiñones JF, Irizarry RA, Díaz-Blanco NL, Rivera-Molina FE, Gómez-Garzón D, Rodríguez-Medina JR.

BMC Genomics. 2008 Jan 23;9:34.

PMID: 18215314 [PubMed - indexed for MEDLINE]

6:

Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering.

Gasch AP, Eisen MB.

Genome Biol. 2002 Oct 10;3(11):RESEARCH0059. Epub 2002 Oct 10.

PMID: 12429058 [PubMed - indexed for MEDLINE]

8:

Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors.

Grigull J, Mnaimneh S, Pootoolal J, Robinson MD, Hughes TR.

Mol Cell Biol. 2004 Jun;24(12):5534-47.

PMID: 15169913 [PubMed - indexed for MEDLINE]

9:

Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale.

Beyer A, Hollunder J, Nasheuer HP, Wilhelm T.

Mol Cell Proteomics. 2004 Nov;3(11):1083-92. Epub 2004 Aug 23.

PMID: 15326222 [PubMed - indexed for MEDLINE]

10:

Comprehensive transcriptional analysis of the oxidative response in yeast.

Molina-Navarro MM, Castells-Roca L, Bellí G, García-Martínez J, Marín-Navarro J, Moreno J, Pérez-Ortín JE, Herrero E.

J Biol Chem. 2008 Jun 27;283(26):17908-18. Epub 2008 Apr 17.

PMID: 18424442 [PubMed - indexed for MEDLINE]

11:

The yeast transcription factor genes YAP1 and YAP2 are subject to differential control at the levels of both translation and mRNA stability.

Vilela C, Linz B, Rodrigues-Pousada C, McCarthy JE.

Nucleic Acids Res. 1998 Mar 1;26(5):1150-9.

PMID: 9469820 [PubMed - indexed for MEDLINE]

12:

Profiling condition-specific, genome-wide regulation of mRNA stability in yeast.

Foat BC, Houshmandi SS, Olivas WM, Bussemaker HJ.

Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17675-80. Epub 2005 Nov 29.

PMID: 16317069 [PubMed - indexed for MEDLINE]

13:

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein.

Raghava GP, Han JH.

BMC Bioinformatics. 2005 Mar 17;6:59.

PMID: 15773999 [PubMed - indexed for MEDLINE]

14:

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

PMID: 15748298 [PubMed - indexed for MEDLINE]

15:

Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.

Gao F, Foat BC, Bussemaker HJ.

BMC Bioinformatics. 2004 Mar 18;5:31.

PMID: 15113405 [PubMed - indexed for MEDLINE]

16:

Monitoring yeast physiology during very high gravity wort fermentations by frequent analysis of gene expression.

Rautio JJ, Huuskonen A, Vuokko H, Vidgren V, Londesborough J.

Yeast. 2007 Sep;24(9):741-60.

PMID: 17605133 [PubMed - indexed for MEDLINE]

18:

Quantitative analysis of wine yeast gene expression profiles under winemaking conditions.

Varela C, Cárdenas J, Melo F, Agosin E.

Yeast. 2005 Apr 15;22(5):369-83.

PMID: 15806604 [PubMed - indexed for MEDLINE]

19:

Yeast Upf proteins required for RNA surveillance affect global expression of the yeast transcriptome.

Lelivelt MJ, Culbertson MR.

Mol Cell Biol. 1999 Oct;19(10):6710-9.

PMID: 10490610 [PubMed - indexed for MEDLINE]

20:

Genomic run-on evaluates transcription rates for all yeast genes and identifies gene regulatory mechanisms.

García-Martínez J, Aranda A, Pérez-Ortín JE.

Mol Cell. 2004 Jul 23;15(2):303-13.

PMID: 15260981 [PubMed - indexed for MEDLINE]

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