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Items 1 - 20 of 106
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1:

Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destruction.

Fuxelius HH, Darby AC, Cho NH, Andersson SG.

Genome Biol. 2008;9(2):R42. Epub 2008 Feb 26.

PMID: 18302730 [PubMed - indexed for MEDLINE]

2:

Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes.

Andersson JO, Andersson SG.

Mol Biol Evol. 2001 May;18(5):829-39.

PMID: 11319266 [PubMed - indexed for MEDLINE]

3:

Reductive genome evolution from the mother of Rickettsia.

Blanc G, Ogata H, Robert C, Audic S, Suhre K, Vestris G, Claverie JM, Raoult D.

PLoS Genet. 2007 Jan 19;3(1):e14.

PMID: 17238289 [PubMed - indexed for MEDLINE]

4:

Genome degradation is an ongoing process in Rickettsia.

Andersson JO, Andersson SG.

Mol Biol Evol. 1999 Sep;16(9):1178-91.

PMID: 10486973 [PubMed - indexed for MEDLINE]

5:

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.

Wu M, Sun LV, Vamathevan J, Riegler M, Deboy R, Brownlie JC, McGraw EA, Martin W, Esser C, Ahmadinejad N, Wiegand C, Madupu R, Beanan MJ, Brinkac LM, Daugherty SC, Durkin AS, Kolonay JF, Nelson WC, Mohamoud Y, Lee P, Berry K, Young MB, Utterback T, Weidman J, Nierman WC, Paulsen IT, Nelson KE, Tettelin H, O'Neill SL, Eisen JA.

PLoS Biol. 2004 Mar;2(3):E69. Epub 2004 Mar 16.

PMID: 15024419 [PubMed - indexed for MEDLINE]

6:

Sca1, a previously undescribed paralog from autotransporter protein-encoding genes in Rickettsia species.

Ngwamidiba M, Blanc G, Raoult D, Fournier PE.

BMC Microbiol. 2006 Feb 20;6:12.

PMID: 16504018 [PubMed - indexed for MEDLINE]

7:

Birth and death of orphan genes in Rickettsia.

Amiri H, Davids W, Andersson SG.

Mol Biol Evol. 2003 Oct;20(10):1575-87. Epub 2003 Jun 27.

PMID: 12832625 [PubMed - indexed for MEDLINE]

8:

Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome.

Blanc G, Ogata H, Robert C, Audic S, Claverie JM, Raoult D.

Genome Res. 2007 Nov;17(11):1657-64. Epub 2007 Oct 4.

PMID: 17916642 [PubMed - indexed for MEDLINE]

9:

Mechanisms of evolution in Rickettsia conorii and R. prowazekii.

Ogata H, Audic S, Renesto-Audiffren P, Fournier PE, Barbe V, Samson D, Roux V, Cossart P, Weissenbach J, Claverie JM, Raoult D.

Science. 2001 Sep 14;293(5537):2093-8.

PMID: 11557893 [PubMed - indexed for MEDLINE]

10:

Similarity-based gene detection: using COGs to find evolutionarily-conserved ORFs.

Powell BC, Hutchison CA 3rd.

BMC Bioinformatics. 2006 Jan 19;7:31.

PMID: 16423288 [PubMed - indexed for MEDLINE]

11:

Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales.

Guerrero G, Peralta H, Aguilar A, Díaz R, Villalobos MA, Medrano-Soto A, Mora J.

BMC Evol Biol. 2005 Oct 17;5:55.

PMID: 16229745 [PubMed - indexed for MEDLINE]

12:

New perspectives on rickettsial evolution from new genome sequences of rickettsia, particularly R. canadensis, and Orientia tsutsugamushi.

Eremeeva ME, Madan A, Shaw CD, Tang K, Dasch GA.

Ann N Y Acad Sci. 2005 Dec;1063:47-63. Review.

PMID: 16481489 [PubMed - indexed for MEDLINE]

13:

Comprehensive search for intra- and inter-specific sequence polymorphisms among coding envelope genes of retroviral origin found in the human genome: genes and pseudogenes.

de Parseval N, Diop G, Blaise S, Helle F, Vasilescu A, Matsuda F, Heidmann T.

BMC Genomics. 2005 Sep 9;6:117.

PMID: 16150157 [PubMed - indexed for MEDLINE]

15:

Selfish DNA in protein-coding genes of Rickettsia.

Ogata H, Audic S, Barbe V, Artiguenave F, Fournier PE, Raoult D, Claverie JM.

Science. 2000 Oct 13;290(5490):347-50.

PMID: 11030655 [PubMed - indexed for MEDLINE]

16:

Rice pseudomolecule-anchored cross-species DNA sequence alignments indicate regional genomic variation in expressed sequence conservation.

Armstead I, Huang L, King J, Ougham H, Thomas H, King I.

BMC Genomics. 2007 Aug 20;8:283.

PMID: 17708759 [PubMed - indexed for MEDLINE]

17:

The opcA and (psi)opcB regions in Neisseria: genes, pseudogenes, deletions, insertion elements and DNA islands.

Zhu P, Morelli G, Achtman M.

Mol Microbiol. 1999 Aug;33(3):635-50.

PMID: 10417653 [PubMed - indexed for MEDLINE]

18:

Comparative genomics of microbial pathogens and symbionts.

Andersson SG, Alsmark C, Canbäck B, Davids W, Frank C, Karlberg O, Klasson L, Antoine-Legault B, Mira A, Tamas I.

Bioinformatics. 2002;18 Suppl 2:S17.

PMID: 12385978 [PubMed - indexed for MEDLINE]

19:

Proliferation and deterioration of Rickettsia palindromic elements.

Amiri H, Alsmark CM, Andersson SG.

Mol Biol Evol. 2002 Aug;19(8):1234-43.

PMID: 12140235 [PubMed - indexed for MEDLINE]

20:

The Whole-genome sequencing of the obligate intracellular bacterium Orientia tsutsugamushi revealed massive gene amplification during reductive genome evolution.

Nakayama K, Yamashita A, Kurokawa K, Morimoto T, Ogawa M, Fukuhara M, Urakami H, Ohnishi M, Uchiyama I, Ogura Y, Ooka T, Oshima K, Tamura A, Hattori M, Hayashi T.

DNA Res. 2008 Aug;15(4):185-99. Epub 2008 May 28.

PMID: 18508905 [PubMed - indexed for MEDLINE]

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