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Items 1 - 20 of 101
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1:

Sequence-based prediction of protein-protein interactions by means of codon usage.

Najafabadi HS, Salavati R.

Genome Biol. 2008;9(5):R87. Epub 2008 May 23.

PMID: 18501006 [PubMed - indexed for MEDLINE]

2:

Low-usage codons in Escherichia coli, yeast, fruit fly and primates.

Zhang SP, Zubay G, Goldman E.

Gene. 1991 Aug 30;105(1):61-72.

PMID: 1937008 [PubMed - indexed for MEDLINE]

4:

Production of recombinant SERA proteins of Plasmodium falciparum in Escherichia coli by using synthetic genes.

Sugiyama T, Suzue K, Okamoto M, Inselburg J, Tai K, Horii T.

Vaccine. 1996 Aug;14(11):1069-76.

PMID: 8879104 [PubMed - indexed for MEDLINE]

5:

PIPE: a protein-protein interaction prediction engine based on the re-occurring short polypeptide sequences between known interacting protein pairs.

Pitre S, Dehne F, Chan A, Cheetham J, Duong A, Emili A, Gebbia M, Greenblatt J, Jessulat M, Krogan N, Luo X, Golshani A.

BMC Bioinformatics. 2006 Jul 27;7:365.

PMID: 16872538 [PubMed - indexed for MEDLINE]

7:

High-level periplasmic expression in Escherichia coli using a eukaryotic signal peptide: importance of codon usage at the 5' end of the coding sequence.

Humphreys DP, Sehdev M, Chapman AP, Ganesh R, Smith BJ, King LM, Glover DJ, Reeks DG, Stephens PE.

Protein Expr Purif. 2000 Nov;20(2):252-64.

PMID: 11049749 [PubMed - indexed for MEDLINE]

9:

Gene length and codon usage bias in Drosophila melanogaster, Saccharomyces cerevisiae and Escherichia coli.

Moriyama EN, Powell JR.

Nucleic Acids Res. 1998 Jul 1;26(13):3188-93.

PMID: 9628917 [PubMed - indexed for MEDLINE]

10:

An evaluation of measures of synonymous codon usage bias.

Comeron JM, Aguadé M.

J Mol Evol. 1998 Sep;47(3):268-74.

PMID: 9732453 [PubMed - indexed for MEDLINE]

11:

Differential codon usage for conserved amino acids: evidence that the serine codons TCN were primordial.

Diaz-Lazcoz Y, Hénaut A, Vigier P, Risler JL.

J Mol Biol. 1995 Jul 7;250(2):123-7.

PMID: 7608964 [PubMed - indexed for MEDLINE]

12:

Codon usage: mutational bias, translational selection, or both?

Sharp PM, Stenico M, Peden JF, Lloyd AT.

Biochem Soc Trans. 1993 Nov;21(4):835-41. Review. No abstract available.

PMID: 8132077 [PubMed - indexed for MEDLINE]

13:

Limitations of codon adaptation index and other coding DNA-based features for prediction of protein expression in Saccharomyces cerevisiae.

Friberg M, von Rohr P, Gonnet G.

Yeast. 2004 Oct 15;21(13):1083-93.

PMID: 15484285 [PubMed - indexed for MEDLINE]

14:

Yeast regulatory gene PPR1. I. Nucleotide sequence, restriction map and codon usage.

Kammerer B, Guyonvarch A, Hubert JC.

J Mol Biol. 1984 Dec 5;180(2):239-50.

PMID: 6096561 [PubMed - indexed for MEDLINE]

16:

Codon usage in bacteria: correlation with gene expressivity.

Gouy M, Gautier C.

Nucleic Acids Res. 1982 Nov 25;10(22):7055-74.

PMID: 6760125 [PubMed - indexed for MEDLINE]

17:

Sequence similarity is more relevant than species specificity in probabilistic backtranslation.

Ferro A, Giugno R, Pigola G, Pulvirenti A, Di Pietro C, Purrello M, Ragusa M.

BMC Bioinformatics. 2007 Feb 21;8:58.

PMID: 17313665 [PubMed - indexed for MEDLINE]

18:

Heterologous expression of proteins from Plasmodium falciparum: results from 1000 genes.

Mehlin C, Boni E, Buckner FS, Engel L, Feist T, Gelb MH, Haji L, Kim D, Liu C, Mueller N, Myler PJ, Reddy JT, Sampson JN, Subramanian E, Van Voorhis WC, Worthey E, Zucker F, Hol WG.

Mol Biochem Parasitol. 2006 Aug;148(2):144-60. Epub 2006 Apr 18.

PMID: 16644028 [PubMed - indexed for MEDLINE]

19:

Proteome composition in Plasmodium falciparum: higher usage of GC-rich nonsynonymous codons in highly expressed genes.

Chanda I, Pan A, Dutta C.

J Mol Evol. 2005 Oct;61(4):513-23. Epub 2005 Jul 21.

PMID: 16044241 [PubMed - indexed for MEDLINE]

20:

Codon usage and transfer RNA contents: organism-specific codon-choice patterns in reference to the isoacceptor contents.

Ikemura T, Ozeki H.

Cold Spring Harb Symp Quant Biol. 1983;47 Pt 2:1087-97. No abstract available.

PMID: 6345068 [PubMed - indexed for MEDLINE]

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