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Items 1 - 20 of 101
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1:

Calling on a million minds for community annotation in WikiProteins.

Mons B, Ashburner M, Chichester C, van Mulligen E, Weeber M, den Dunnen J, van Ommen GJ, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, Melton W, Barris N, Wales J, Meijssen G, Moeller E, Roes PJ, Borner K, Bairoch A.

Genome Biol. 2008;9(5):R89. Epub 2008 May 28.

PMID: 18507872 [PubMed - indexed for MEDLINE]

2:

MILANO--custom annotation of microarray results using automatic literature searches.

Rubinstein R, Simon I.

BMC Bioinformatics. 2005 Jan 20;6:12.

PMID: 15661078 [PubMed - indexed for MEDLINE]

3:

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.

PMID: 15383839 [PubMed - indexed for MEDLINE]

4:

GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

Bioinformatics. 2005 Sep 15;21(18):3681-2. Epub 2005 Jul 19.

PMID: 16030072 [PubMed - indexed for MEDLINE]

5:

CBioC: beyond a prototype for collaborative annotation of molecular interactions from the literature.

Baral C, Gonzalez G, Gitter A, Teegarden C, Zeigler A, Joshi-Topé G.

Comput Syst Bioinformatics Conf. 2007;6:381-4.

PMID: 17951840 [PubMed - indexed for MEDLINE]

6:

Filtering erroneous protein annotation.

Wieser D, Kretschmann E, Apweiler R.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i342-7.

PMID: 15262818 [PubMed - indexed for MEDLINE]

7:

DIG--a system for gene annotation and functional discovery.

Delong M, Yao G, Wang Q, Dobra A, Black EP, Chang JT, Bild A, West M, Nevins JR, Dressman H.

Bioinformatics. 2005 Jul 1;21(13):2957-9. Epub 2005 May 3.

PMID: 15870167 [PubMed - indexed for MEDLINE]

8:

MACiE: a database of enzyme reaction mechanisms.

Holliday GL, Bartlett GJ, Almonacid DE, O'Boyle NM, Murray-Rust P, Thornton JM, Mitchell JB.

Bioinformatics. 2005 Dec 1;21(23):4315-6. Epub 2005 Sep 27.

PMID: 16188925 [PubMed - indexed for MEDLINE]

9:

Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation.

Lord PW, Stevens RD, Brass A, Goble CA.

Bioinformatics. 2003 Jul 1;19(10):1275-83.

PMID: 12835272 [PubMed - indexed for MEDLINE]

10:

The Gene Ontology (GO) database and informatics resource.

Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R; Gene Ontology Consortium.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D258-61.

PMID: 14681407 [PubMed - indexed for MEDLINE]

11:

The Protein Information Resource: an integrated public resource of functional annotation of proteins.

Wu CH, Huang H, Arminski L, Castro-Alvear J, Chen Y, Hu ZZ, Ledley RS, Lewis KC, Mewes HW, Orcutt BC, Suzek BE, Tsugita A, Vinayaka CR, Yeh LS, Zhang J, Barker WC.

Nucleic Acids Res. 2002 Jan 1;30(1):35-7.

PMID: 11752247 [PubMed - indexed for MEDLINE]

12:

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

PMID: 17445272 [PubMed - indexed for MEDLINE]

13:

Text processing through Web services: calling Whatizit.

Rebholz-Schuhmann D, Arregui M, Gaudan S, Kirsch H, Jimeno A.

Bioinformatics. 2008 Jan 15;24(2):296-8. Epub 2007 Nov 15.

PMID: 18006544 [PubMed - indexed for MEDLINE]

14:

METIS: multiple extraction techniques for informative sentences.

Mitchell AL, Divoli A, Kim JH, Hilario M, Selimas I, Attwood TK.

Bioinformatics. 2005 Nov 15;21(22):4196-7. Epub 2005 Sep 13.

PMID: 16159915 [PubMed - indexed for MEDLINE]

15:

MODBASE, a database of annotated comparative protein structure models, and associated resources.

Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A, Webb B, Greenblatt D, Huang CC, Ferrin TE, Sali A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D217-22.

PMID: 14681398 [PubMed - indexed for MEDLINE]

16:

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.

Karchin R, Diekhans M, Kelly L, Thomas DJ, Pieper U, Eswar N, Haussler D, Sali A.

Bioinformatics. 2005 Jun 15;21(12):2814-20. Epub 2005 Apr 12.

PMID: 15827081 [PubMed - indexed for MEDLINE]

17:

EXProt: a database for proteins with an experimentally verified function.

Ursing BM, van Enckevort FH, Leunissen JA, Siezen RJ.

Nucleic Acids Res. 2002 Jan 1;30(1):50-1.

PMID: 11752251 [PubMed - indexed for MEDLINE]

18:

Human protein reference database as a discovery resource for proteomics.

Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D497-501.

PMID: 14681466 [PubMed - indexed for MEDLINE]

19:

Using the Ensembl genome server to browse genomic sequence data.

Fernández-Suárez XM, Schuster MK.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 1:Unit 1.15.

PMID: 18428779 [PubMed - indexed for MEDLINE]

20:

JXP4BIGI: a generalized, Java XML-based approach for biological information gathering and integration.

Huang Y, Ni T, Zhou L, Su S.

Bioinformatics. 2003 Dec 12;19(18):2351-8.

PMID: 14668218 [PubMed - indexed for MEDLINE]

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