GMODWeb: a web framework for the Generic Model Organism Database.

O'Connor BD, Day A, Cain S, Arnaiz O, Sperling L, Stein LD.

Genome Biol. 2008;9(6):R102. Epub 2008 Jun 20.

PMID: 18570664 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

The generic genome browser: a building block for a model organism system database.

Stein LD, Mungall C, Shu S, Caudy M, Mangone M, Day A, Nickerson E, Stajich JE, Harris TW, Arva A, Lewis S.

Genome Res. 2002 Oct;12(10):1599-610.

PMID: 12368253 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

A Chado case study: an ontology-based modular schema for representing genome-associated biological information.

Mungall CJ, Emmert DB; FlyBase Consortium.

Bioinformatics. 2007 Jul 1;23(13):i337-46.

PMID: 17646315 [PubMed - indexed for MEDLINE]

Related Articles

BeetleBase: the model organism database for Tribolium castaneum.

Wang L, Wang S, Li Y, Paradesi MS, Brown SJ.

Nucleic Acids Res. 2007 Jan;35(Database issue):D476-9. Epub 2006 Nov 7.

PMID: 17090595 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

Xanthusbase: adapting wikipedia principles to a model organism database.

Arshinoff BI, Suen G, Just EM, Merchant SM, Kibbe WA, Chisholm RL, Welch RD.

Nucleic Acids Res. 2007 Jan;35(Database issue):D422-6. Epub 2006 Nov 7.

PMID: 17090585 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

The Pathway Tools software.

Karp PD, Paley S, Romero P.

Bioinformatics. 2002;18 Suppl 1:S225-32.

PMID: 12169551 [PubMed - indexed for MEDLINE]

Related Articles

MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.

PMID: 17044936 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

dictyBase, the model organism database for Dictyostelium discoideum.

Chisholm RL, Gaudet P, Just EM, Pilcher KE, Fey P, Merchant SN, Kibbe WA.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D423-7.

PMID: 16381903 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

GeneX Va: VBC open source microarray database and analysis software.

Lee JK, Laudeman T, Kanter J, James T, Siadaty MS, Knaus WA, Prorok A, Bao Y, Freeman B, Puiu D, Wen LM, Buck GA, Schlauch K, Weller J, Fox JW.

Biotechniques. 2004 Apr;36(4):634-8, 640, 642.

PMID: 15088382 [PubMed - indexed for MEDLINE]

Related Articles

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

PMID: 16603075 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

SmedGD: the Schmidtea mediterranea genome database.

Robb SM, Ross E, Sánchez Alvarado A.

Nucleic Acids Res. 2008 Jan;36(Database issue):D599-606. Epub 2007 Sep 18.

PMID: 17881371 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

maxdLoad2 and maxdBrowse: standards-compliant tools for microarray experimental annotation, data management and dissemination.

Hancock D, Wilson M, Velarde G, Morrison N, Hayes A, Hulme H, Wood AJ, Nashar K, Kell DB, Brass A.

BMC Bioinformatics. 2005 Nov 3;6:264.

PMID: 16269077 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

An XML message broker framework for exchange and integration of microarray data.

Tjandra D, Wong S, Shen W, Pulliam B, Yu E, Esserman L.

Bioinformatics. 2003 Sep 22;19(14):1844-5.

PMID: 14512357 [PubMed - indexed for MEDLINE]

Related Articles

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.

PMID: 17123449 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

SubtiList: the reference database for the Bacillus subtilis genome.

Moszer I, Jones LM, Moreira S, Fabry C, Danchin A.

Nucleic Acids Res. 2002 Jan 1;30(1):62-5.

PMID: 11752255 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

The Ensembl Web site: mechanics of a genome browser.

Stalker J, Gibbins B, Meidl P, Smith J, Spooner W, Hotz HR, Cox AV.

Genome Res. 2004 May;14(5):951-5.

PMID: 15123591 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists.

Heinicke S, Livstone MS, Lu C, Oughtred R, Kang F, Angiuoli SV, White O, Botstein D, Dolinski K.

PLoS ONE. 2007 Aug 22;2(1):e766.

PMID: 17712414 [PubMed]

Related Articles Free article in PMC

An ontology for cell types.

Bard J, Rhee SY, Ashburner M.

Genome Biol. 2005;6(2):R21. Epub 2005 Jan 14.

PMID: 15693950 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

FPC Web tools for rice, maize, and distribution.

Pampanwar V, Engler F, Hatfield J, Blundy S, Gupta G, Soderlund C.

Plant Physiol. 2005 May;138(1):116-26.

PMID: 15888684 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC

The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.

Camon E, Magrane M, Barrell D, Lee V, Dimmer E, Maslen J, Binns D, Harte N, Lopez R, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D262-6.

PMID: 14681408 [PubMed - indexed for MEDLINE]

Related Articles Free article in PMC