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Items 1 - 20 of 105
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1:

Consistent probabilistic outputs for protein function prediction.

Obozinski G, Lanckriet G, Grant C, Jordan MI, Noble WS.

Genome Biol. 2008;9 Suppl 1:S6. Epub 2008 Jun 27.

PMID: 18613950 [PubMed - indexed for MEDLINE]

2:

Hierarchical multi-label prediction of gene function.

Barutcuoglu Z, Schapire RE, Troyanskaya OG.

Bioinformatics. 2006 Apr 1;22(7):830-6. Epub 2006 Jan 12.

PMID: 16410319 [PubMed - indexed for MEDLINE]

3:

Information theory applied to the sparse gene ontology annotation network to predict novel gene function.

Tao Y, Sam L, Li J, Friedman C, Lussier YA.

Bioinformatics. 2007 Jul 1;23(13):i529-38.

PMID: 17646340 [PubMed - indexed for MEDLINE]

4:

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

BMC Bioinformatics. 2008 Jan 25;9:52.

PMID: 18221520 [PubMed - indexed for MEDLINE]

5:

Integration of relational and hierarchical network information for protein function prediction.

Jiang X, Nariai N, Steffen M, Kasif S, Kolaczyk ED.

BMC Bioinformatics. 2008 Aug 22;9:350.

PMID: 18721473 [PubMed - indexed for MEDLINE]

6:

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence.

Peña-Castillo L, Tasan M, Myers CL, Lee H, Joshi T, Zhang C, Guan Y, Leone M, Pagnani A, Kim WK, Krumpelman C, Tian W, Obozinski G, Qi Y, Mostafavi S, Lin GN, Berriz GF, Gibbons FD, Lanckriet G, Qiu J, Grant C, Barutcuoglu Z, Hill DP, Warde-Farley D, Grouios C, Ray D, Blake JA, Deng M, Jordan MI, Noble WS, Morris Q, Klein-Seetharaman J, Bar-Joseph Z, Chen T, Sun F, Troyanskaya OG, Marcotte EM, Xu D, Hughes TR, Roth FP.

Genome Biol. 2008;9 Suppl 1:S2. Epub 2008 Jun 27.

PMID: 18613946 [PubMed - indexed for MEDLINE]

7:

ProLoc-GO: utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization.

Huang WL, Tung CW, Ho SW, Hwang SF, Ho SY.

BMC Bioinformatics. 2008 Feb 1;9:80.

PMID: 18241343 [PubMed - indexed for MEDLINE]

8:

Globally predicting protein functions based on co-expressed protein-protein interaction networks and ontology taxonomy similarities.

Zhu M, Gao L, Guo Z, Li Y, Wang D, Wang J, Wang C.

Gene. 2007 Apr 15;391(1-2):113-9. Epub 2006 Dec 22.

PMID: 17289301 [PubMed - indexed for MEDLINE]

9:

Automated methods of predicting the function of biological sequences using GO and BLAST.

Jones CE, Baumann U, Brown AL.

BMC Bioinformatics. 2005 Nov 15;6:272.

PMID: 16288652 [PubMed - indexed for MEDLINE]

10:

A categorization approach to automated ontological function annotation.

Verspoor K, Cohn J, Mniszewski S, Joslyn C.

Protein Sci. 2006 Jun;15(6):1544-9. Epub 2006 May 2.

PMID: 16672243 [PubMed - indexed for MEDLINE]

11:

Mining protein function from text using term-based support vector machines.

Rice SB, Nenadic G, Stapley BJ.

BMC Bioinformatics. 2005;6 Suppl 1:S22. Epub 2005 May 24.

PMID: 15960835 [PubMed - indexed for MEDLINE]

12:

Predicting gene function in a hierarchical context with an ensemble of classifiers.

Guan Y, Myers CL, Hess DC, Barutcuoglu Z, Caudy AA, Troyanskaya OG.

Genome Biol. 2008;9 Suppl 1:S3. Epub 2008 Jun 27.

PMID: 18613947 [PubMed - indexed for MEDLINE]

13:

Automatic annotation of protein motif function with Gene Ontology terms.

Lu X, Zhai C, Gopalakrishnan V, Buchanan BG.

BMC Bioinformatics. 2004 Sep 2;5:122.

PMID: 15345032 [PubMed - indexed for MEDLINE]

14:

An en masse phenotype and function prediction system for Mus musculus.

Taşan M, Tian W, Hill DP, Gibbons FD, Blake JA, Roth FP.

Genome Biol. 2008;9 Suppl 1:S8. Epub 2008 Jun 27.

PMID: 18613952 [PubMed - indexed for MEDLINE]

15:

Prediction of protein subcellular localization.

Yu CS, Chen YC, Lu CH, Hwang JK.

Proteins. 2006 Aug 15;64(3):643-51.

PMID: 16752418 [PubMed - indexed for MEDLINE]

16:

Enhanced automated function prediction using distantly related sequences and contextual association by PFP.

Hawkins T, Luban S, Kihara D.

Protein Sci. 2006 Jun;15(6):1550-6. Epub 2006 May 2.

PMID: 16672240 [PubMed - indexed for MEDLINE]

17:

How to decide which are the most pertinent overly-represented features during gene set enrichment analysis.

Barriot R, Sherman DJ, Dutour I.

BMC Bioinformatics. 2007 Sep 11;8:332.

PMID: 17848190 [PubMed - indexed for MEDLINE]

18:

Predicting protein function from protein/protein interaction data: a probabilistic approach.

Letovsky S, Kasif S.

Bioinformatics. 2003;19 Suppl 1:i197-204.

PMID: 12855458 [PubMed - indexed for MEDLINE]

19:

Evaluation of BioCreAtIvE assessment of task 2.

Blaschke C, Leon EA, Krallinger M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.

PMID: 15960828 [PubMed - indexed for MEDLINE]

20:

Protein classification using probabilistic chain graphs and the Gene Ontology structure.

Carroll S, Pavlovic V.

Bioinformatics. 2006 Aug 1;22(15):1871-8. Epub 2006 May 16.

PMID: 16705013 [PubMed - indexed for MEDLINE]

Items 1 - 20 of 105
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