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Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F
Genome Biol 2002 Jun 18, 3: RESEARCH0034
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71.
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Research article    
Relative quantification of mRNA: comparison of methods currently used for real-time PCR data analysis
iko , Bukovská A, Koppel J
BMC Molecular Biology 2007, 8: 113
(20 December 2007)
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72.
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Research article    
Serial Analysis of Gene Expression in Plasmodium berghei salivary gland sporozoites
Rosinski-Chupin I, Chertemps T, Boisson B, Perrot S, Bischoff E, Briolay J, Couble P, Ménard R, Brey P, Baldacci P
BMC Genomics 2007, 8: 466
(19 December 2007)
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73.
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Methodology    
Determination of suitable housekeeping genes for normalisation of quantitative real time PCR analysis of cells infected with human immunodeficiency virus and herpes viruses
Watson S, Mercier S, Bye C, Wilkinson J, Cunningham AL, Harman AN
Virology Journal 2007, 4: 130
(3 December 2007)
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74.
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Research article    
Long-term stability of RNA in post-mortem bovine skeletal muscle, liver and subcutaneous adipose tissues
Bahar B, Monahan FJ, Moloney AP, Schmidt O, MacHugh DE, Sweeney T
BMC Molecular Biology 2007, 8: 108
(29 November 2007)
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75.
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Methodology article    
Evaluation and validation of candidate endogenous control genes for real-time quantitative PCR studies of breast cancer
McNeill RE, Miller N, Kerin MJ
BMC Molecular Biology 2007, 8: 107
(27 November 2007)
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76.
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Research article    
Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development
Deluc LG, Grimplet J, Wheatley MD, Tillett RL, Quilici DR, Osborne C, Schooley DA, Schlauch KA, Cushman JC, Cramer GR
BMC Genomics 2007, 8: 429
(22 November 2007)
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77.
33%33%


Research article    
A SAGE-based screen for genes expressed in sub-populations of neurons in the mouse dorsal root ganglion
Bourane S, Méchaly I, Venteo S, Garces A, Fichard A, Valmier J, Carroll P
BMC Neuroscience 2007, 8: 97
(19 November 2007)
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78.
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Research article    
Effects of iron loading on muscle: genome-wide mRNA expression profiling in the mouse
Rodriguez A, Hilvo M, Kytömäki L, Fleming RE, Britton RS, Bacon BR, Parkkila S
BMC Genomics 2007, 8: 379
(19 October 2007)
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79.
33%33%


Research article    
Wide diversity in structure and expression profiles among members of the Caenorhabditis elegans globin protein family
Hoogewijs D, Geuens E, Dewilde S, Vierstraete A, Moens L, Vinogradov S, Vanfleteren JR
BMC Genomics 2007, 8: 356
(4 October 2007)
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80.
33%33%


Research    
Reversible and permanent effects of tobacco smoke exposure on airway epithelial gene expression
Beane J, Sebastiani P, Liu G, Brody JS, Lenburg ME, Spira A
Genome Biology 2007, 8(9):R201
(25 September 2007)
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81.
33%33%


Research article    
Evaluation of reference genes for real-time RT-PCR expression studies in the plant pathogen Pectobacterium atrosepticum
Takle GW, Toth IK, Brurberg MB
BMC Plant Biology 2007, 7: 50
(21 September 2007)
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82.
33%33%


Research article    
Successful downstream application of the Paxgene Blood RNA system from small blood samples in paediatric patients for quantitative PCR analysis
Carrol ED, Salway F, Pepper SD, Saunders E, Mankhambo LA, Ollier WE, Hart CA, Day P
BMC Immunology 2007, 8: 20
(12 September 2007)
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83.
33%33%


Research article    
BCoR-L1 variation and breast cancer
Lose F, Arnold J, Young DB, Brown CJ, Mann GJ, Pupo GM, The Kathleen Cuningham Foundation Consortium for Research into Familial Breast Cancer , Khanna KK, Chenevix-Trench G, Spurdle AB
Breast Cancer Research 2007, 9: R54
(16 August 2007)
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84.
33%33%


Research article    
De-regulation of common housekeeping genes in hepatocellular carcinoma
Waxman S, Wurmbach E
BMC Genomics 2007, 8: 243
(18 July 2007)
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85.
33%33%


Research    
Human type 2 17beta-hydroxysteroid dehydrogenase mRNA and protein distribution in placental villi at mid and term pregnancy
Drolet R, Simard M, Plante J, Laberge P, Tremblay Y
Reproductive Biology and Endocrinology 2007, 5: 30
(10 July 2007)
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86.
33%33%


Research article    
Cartilage-selective genes identified in genome-scale analysis of non-cartilage and cartilage gene expression
Funari VA, Day A, Krakow D, Cohn ZA, Chen Z, Nelson SF, Cohn DH
BMC Genomics 2007, 8: 165
(12 June 2007)
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87.
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Research    
Large-scale identification of human genes implicated in epidermal barrier function
Toulza E, Mattiuzzo NR, Galliano MF, Jonca N, Dossat C, Jacob D, de Daruvar A, Wincker P, Serre G, Guerrin M
Genome Biology 2007, 8(6):R107
(11 June 2007)
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88.
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Methodology article    
Selection of DDX5 as a novel internal control for Q-RT-PCR from microarray data using a block bootstrap re-sampling scheme
Su LJ, Chang CW, Wu YC, Chen KC, Lin CJ, Liang SC, Lin CH, Whang-Peng J, Hsu SL, Chen CH, Huang CYF
BMC Genomics 2007, 8: 140
(1 June 2007)
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89.
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Methodology article    
Validation of reference genes for quantitative RT-PCR studies in porcine oocytes and preimplantation embryos
Kuijk EW, du Puy L, van Tol HTA, Haagsman HP, Colenbrander B, Roelen BAJ
BMC Developmental Biology 2007, 7: 58
(31 May 2007)
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90.
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Research    
Gene expression variation in Down's syndrome mice allows prioritization of candidate genes
Sultan M, Piccini I, Balzereit D, Herwig R, Saran NG, Lehrach H, Reeves RH, Yaspo ML
Genome Biology 2007, 8(5):R91
(25 May 2007)
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91.
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Research article    
Reduced expression of TAC1, PENK and SOCS2 in Hcrtr-2 mutated narcoleptic dog brain
Lindberg J, Saetre P, Nishino S, Mignot E, Jazin E
BMC Neuroscience 2007, 8: 34
(23 May 2007)
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92.
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Research article    
The interaction of PP1 with BRCA1 and analysis of their expression in breast tumors
Winter SL, Bosnoyan-Collins L, Pinnaduwage D, Andrulis IL
BMC Cancer 2007, 7: 85
(19 May 2007)
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93.
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Research article    
Expression stability of commonly used reference genes in canine articular connective tissues
Ayers D, Clements DN, Salway F, Day PJR
BMC Veterinary Research 2007, 3: 7
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94.
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Research    
CIDE-A is expressed in liver of old mice and in type 2 diabetic mouse liver exhibiting steatosis
Kelder B, Boyce K, Kriete A, Clark R, Berryman DE, Nagatomi S, List EO, Braughler M, Kopchick JJ
Comparative Hepatology 2007, 6: 4
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95.
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Research    
Selection for tameness modulates the expression of heme related genes in silver foxes
Lindberg J, Björnerfeldt S, Bakken M, Vilà C, Jazin E, Saetre P
Behavioral and Brain Functions 2007, 3: 18
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96.
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Research    
Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
Gorodkin J, Cirera S, Hedegaard J, Gilchrist MJ, Panitz F, Jørgensen C, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Rosenkilde C, Wang J, Li H, Li R, Liu B, Hu S, Dong W, Li W, Yu J, Wang J, Stærfeldt HH, Wernersson R, Madsen LB, Thomsen B, Hornshøj H, Bujie Z, Wang X, Wang X, Bolund L, Brunak S, Yang H, Bendixen C, Fredholm M
Genome Biology 2007, 8(4):R45
(2 April 2007)
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97.
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Research article    
A systematic quantification of carbonic anhydrase transcripts in the mouse digestive system
Pan P, Rodriguez A, Parkkila S
BMC Molecular Biology 2007, 8: 22
(16 March 2007)
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98.
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Research article    
Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer
Kloth JN, Oosting J, van Wezel T, Szuhai K, Knijnenburg J, Gorter A, Kenter GG, Fleuren GJ, Jordanova ES
BMC Genomics 2007, 8: 53
(20 February 2007)
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99.
33%33%


Method    
qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
Hellemans J, Mortier G, De Paepe A, Speleman F, Vandesompele J
Genome Biology 2007, 8(2):R19
(9 February 2007)
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100.
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Methodology article    
"NeuroStem Chip": a novel highly specialized tool to study neural differentiation pathways in human stem cells
Anisimov SV, Christophersen NS, Correia AS, Li JY, Brundin P
BMC Genomics 2007, 8: 46
(8 February 2007)
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101.
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Research article    
Simultaneous host and parasite expression profiling identifies tissue-specific transcriptional programs associated with susceptibility or resistance to experimental cerebral malaria
Lovegrove FE, Peña-Castillo L, Mohammad N, Liles WC, Hughes TR, Kain KC
BMC Genomics 2006, 7: 295
(22 November 2006)
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102.
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Research    
Expression of full-length p53 and its isoform p53 in breast carcinomas in relation to mutation status and clinical parameters
Baumbusch LO, Myhre S, Langerød A, Bergamaschi A, Geisler SB, Lønning PE, Deppert W, Dornreiter I, Børresen-Dale AL
Molecular Cancer 2006, 5: 47
(20 October 2006)
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103.
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Research article    
Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
Crismani W, Baumann U, Sutton T, Shirley N, Webster T, Spangenberg G, Langridge P, Able JA
BMC Genomics 2006, 7: 267
(19 October 2006)
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104.
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Research article    
Analysis of normal and osteoarthritic canine cartilage mRNA expression by quantitative polymerase chain reaction
Clements DN, Carter SD, Innes JF, Ollier WER, Day PJR
Arthritis Research & Therapy 2006, 8: R158
(10 October 2006)
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105.
33%33%


Methodology article    
Selection of housekeeping genes for gene expression studies in human reticulocytes using real-time PCR
Silver N, Best S, Jiang J, Thein SL
BMC Molecular Biology 2006, 7: 33
(6 October 2006)
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106.
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Research    
Human fetal neuroblast and neuroblastoma transcriptome analysis confirms neuroblast origin and highlights neuroblastoma candidate genes
De Preter K, Vandesompele J, Heimann P, Yigit N, Beckman S, Schramm A, Eggert A, Stallings RL, Benoit Y, Renard M, Paepe AD, Laureys G, Påhlman S, Speleman F
Genome Biology 2006, 7(9):R84
(21 September 2006)
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107.
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Research article    
Selection of reference genes for quantitative RT-PCR studies in striped dolphin (Stenella coeruleoalba) skin biopsies
Spinsanti G, Panti C, Lazzeri E, Marsili L, Casini S, Frati F, Fossi CM
BMC Molecular Biology 2006, 7: 32
(19 September 2006)
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108.
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Research    
Specific down-regulation of XIAP with RNA interference enhances the sensitivity of canine tumor cell-lines to TRAIL and doxorubicin
Spee B, Jonkers MDB, Arends B, Rutteman GR, Rothuizen J, Penning LC
Molecular Cancer 2006, 5: 34
(5 September 2006)
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109.
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Research article    
Development and evaluation of different normalization strategies for gene expression studies in Candida albicans biofilms by real-time PCR
Nailis H, Coenye T, Van Nieuwerburgh F, Deforce D, Nelis HJ
BMC Molecular Biology 2006, 7: 25
(4 August 2006)
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110.
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Research article    
Selection of suitable reference genes for accurate normalization of gene expression profile studies in non-small cell lung cancer
Saviozzi S, Cordero F, Iacono ML, Novello S, Giorgio SV, Calogero RA
BMC Cancer 2006, 6: 200
(26 July 2006)
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111.
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Research article    
Gene expression profiling of Spodoptera frugiperda hemocytes and fat body using cDNA microarray reveals polydnavirus-associated variations in lepidopteran host genes transcript levels
Barat-Houari M, Hilliou F, Jousset FX, Sofer L, Deleury E, Rocher J, Ravallec M, Galibert L, Delobel P, Feyereisen R, Fournier P, Volkoff AN
BMC Genomics 2006, 7: 160
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112.
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Research    
Members of the Hyposoter didymator Ichnovirus repeat element gene family are differentially expressed in Spodoptera frugiperda
Galibert L, Devauchelle G, Cousserans F, Rocher J, Cérutti P, Barat-Houari M, Fournier P, Volkoff AN
Virology Journal 2006, 3: 48
(19 June 2006)
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Research article    
AIB1 gene amplification and the instability of polyQ encoding sequence in breast cancer cell lines
Wong LJC, Dai P, Lu JF, Lou MA, Clarke R, Nazarov V
BMC Cancer 2006, 6: 111
(2 May 2006)
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114.
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Research article    
Differential expression of selected histone modifier genes in human solid cancers
Özda H, Teschendorff AE, Ahmed AA, Hyland SJ, Blenkiron C, Bobrow L, Veerakumarasivam A, Burtt G, Subkhankulova T, Arends MJ, Collins VP, Bowtell D, Kouzarides T, Brenton JD, Caldas C
BMC Genomics 2006, 7: 90
(25 April 2006)
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115.
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Research article    
Expression analysis of candidate breast tumour suppressor genes on chromosome 16q
van Wezel T, Lombaerts M, van Roon EH, Philippo K, Baelde HJ, Szuhai K, Cornelisse CJ, Cleton-Jansen AM
Breast Cancer Research 2005, 7: R998-R1004
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116.
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Research    
Screening and identification of differentially expressed transcripts in circulating cells of prostate cancer patients using suppression subtractive hybridization
Li X, Wong C, Mysel R, Slobodov G, Metwalli A, Kruska J, Manatt CS, Culkin DJ, Kropp BP, Lin HK
Molecular Cancer 2005, 4: 30
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Research article    
Positional and functional mapping of a neuroblastoma differentiation gene on chromosome 11
De Preter K, Vandesompele J, Menten B, Carr P, Fiegler H, Edsjö A, Carter NP, Yigit N, Waelput W, Van Roy N, Bader S, Påhlman S, Speleman F
BMC Genomics 2005, 6: 97
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118.
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Research article    
Palm is expressed in both developing and adult mouse lens and retina
Castellini M, Wolf LV, Chauhan BK, Galileo DS, Kilimann MW, Cvekl A, Duncan MK
BMC Ophthalmology 2005, 5: 14
(21 June 2005)
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119.
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Methodology article    
A standard curve based method for relative real time PCR data processing
Larionov A, Krause A, Miller W
BMC Bioinformatics 2005, 6: 62
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120.
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Research article    
Selection of reference genes for gene expression studies in human neutrophils by real-time PCR
Zhang X, Ding L, Sandford AJ
BMC Molecular Biology 2005, 6: 4
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121.
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Research    
Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6, Camelpox virus and Cytomegalovirus infections
Radoni A, Thulke S, Bae HG, Müller MA, Siegert W, Nitsche A
Virology Journal 2005, 2: 7
(10 February 2005)
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122.
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Research    
Identifying genetic networks underlying myometrial transition to labor
Salomonis N, Cotte N, Zambon AC, Pollard KS, Vranizan K, Doniger SW, Dolganov G, Conklin BR
Genome Biology 2005, 6(2):R12
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123.
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Research article    
Gene expression profiles in the rat streptococcal cell wall-induced arthritis model identified using microarray analysis
Rioja I, Clayton CL, Graham SJ, Life PF, Dickson MC
Arthritis Res Ther 2005, 7: R101-R117
(19 November 2004)
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124.
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Review    
The tandem CCCH zinc finger protein tristetraprolin and its relevance to cytokine mRNA turnover and arthritis
Carrick DM, Lai WS, Blackshear PJ
Arthritis Res Ther 2004, 6: 248-264
(8 October 2004)
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125.
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Method    
Statistical modeling for selecting housekeeper genes
Szabo A, Perou CM, Karaca M, Perreard L, Quackenbush JF, Bernard PS
Genome Biology 2004, 5(8):R59
(29 July 2004)
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Research article    
Combined subtractive cDNA cloning and array CGH: an efficient approach for identification of overexpressed genes in DNA amplicons
De Preter K, Pattyn F, Berx G, Strumane K, Menten B, Van Roy F, De Paepe A, Speleman F, Vandesompele J
BMC Genomics 2004, 5: 11
(3 February 2004)
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