Log on / register
BioMed Central home | Journals A-Z | Feedback | Support | My details
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.
Misra S, Crosby MA, Mungall CJ, Matthews BB, Campbell KS, Hradecky P, Huang Y, Kaminker JS, Millburn GH, Prochnik SE, Smith CD, Tupy JL, Whitfied EJ, Bayraktaroglu L, Berman BP, Bettencourt BR, Celniker SE, de Grey AD, Drysdale RA, Harris NL, Richter J, Russo S, Schroeder AJ, Shu SQ, Stapleton M, Yamada C, Ashburner M, Gelbart WM, Rubin GM, Lewis SE
Genome Biol 2002, 3: RESEARCH0083
[Full text] [PubMed] [Related articles] [Cited on BioMed Central]

printer friendly 
to  [Help]

BioMed Central articles that cite the above article:

1.


Research article    
Regulation of MYCN expression in human neuroblastoma cells
Jacobs JFM, van Bokhoven H, van Leeuwen FN, Hulsbergen-van de Kaa CA, de Vries IJM, Adema GJ, Hoogerbrugge PM, de Brouwer APM
BMC Cancer 2009, 9: 239
(18 July 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
2.


Methodology article    
Quantitative measures for the management and comparison of annotated genomes
Eilbeck K, Moore B, Holt C, Yandell M
BMC Bioinformatics 2009, 10: 67
(23 February 2009)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
3.


Research article    
Non-random retention of protein-coding overlapping genes in Metazoa
Soldà G, Suyama M, Pelucchi P, Boi S, Guffanti A, Rizzi E, Bork P, Tenchini ML, Ciccarelli FD
BMC Genomics 2008, 9: 174
(16 April 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
4.


Research article    
Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species
Hayden CA, Bosco G
BMC Genomics 2008, 9: 61
(1 February 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
5.


Research article    
Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis
Jin H, Vacic V, Girke T, Lonardi S, Zhu JK
BMC Molecular Biology 2008, 9: 6
(14 January 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
6.


Method    
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR
Genome Biology 2008, 9(1):R7
(11 January 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
7.


Research    
Fine scale structural variants distinguish the genomes of Drosophila melanogaster and D. pseudoobscura
Macdonald SJ, Long AD
Genome Biology 2006, 7(7):R67
(27 July 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
8.


Research    
The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis
Ryan JF, Burton PM, Mazza ME, Kwong GK, Mullikin JC, Finnerty JR
Genome Biology 2006, 7(7):R64
(24 July 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
9.


Software    
yrGATE: a web-based gene-structure annotation tool for the identification and dissemination of eukaryotic genes
Wilkerson MD, Schlueter SD, Brendel V
Genome Biology 2006, 7(7):R58
(19 July 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
10.


Research article    
Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome
Lipatov M, Lenkov K, Petrov DA, Bergman CM
BMC Biology 2005, 3: 24
(12 November 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
11.


Research article    
Sequence signature analysis of chromosome identity in three Drosophila species
Stenberg P, Pettersson F, Saura AO, Berglund A, Larsson J
BMC Bioinformatics 2005, 6: 158
(23 June 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
12.


Research article    
Conserved genomic organisation of Group B Sox genes in insects.
McKimmie C, Woerfel G, Russell S
BMC Genetics 2005, 6: 26
(19 May 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
13.


Research article    
Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release
Haas BJ, Wortman JR, Ronning CM, Hannick LI, Smith RK, Maiti R, Chan AP, Yu C, Farzad M, Wu D, White O, Town CD
BMC Biology 2005, 3: 7
(22 March 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
14.


Research    
Comparison of the oxidative phosphorylation (OXPHOS) nuclear genes in the genomes of Drosophila melanogaster, Drosophila pseudoobscura and Anopheles gambiae
Tripoli G, D'Elia D, Barsanti P, Caggese C
Genome Biology 2005, 6(2):R11
(31 January 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
15.


Database    
DEDB: a database of Drosophila melanogaster exons in splicing graph form
Lee BTK, Tan TW, Ranganathan S
BMC Bioinformatics 2004, 5: 189
(7 December 2004)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
16.




Research    
The regulatory content of intergenic DNA shapes genome architecture
Nelson CE, Hersh BM, Carroll SB
Genome Biology 2004, 5(4):R25
(15 March 2004)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]
17.


Method    
FlyGEM, a full transcriptome array platform for the Drosophila community
Johnston R, Wang B, Nuttall R, Doctolero M, Edwards P, Lü J, Vainer M, Yue H, Wang X, Minor J, Chan C, Lash A, Goralski T, Parisi M, Oliver B, Eastman S
Genome Biology 2004, 5(3):R19
(26 February 2004)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
18.




Research    
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes
Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA
Genome Biology 2004, 5(2):R7
(15 January 2004)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]
19.


Research    
An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome
Hild M, Beckmann B, Haas SA, Koch B, Solovyev V, Busold C, Fellenberg K, Boutros M, Vingron M, Sauer F, Hoheisel JD, Paro R
Genome Biology 2003, 5(1):R3
(22 December 2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
20.


Minireview    
How many genes in a genome?
Oliver B, Leblanc B
Genome Biology 2003, 5(1):204
(22 December 2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
21.


Research article    
Genomic characterization of a repetitive motif strongly associated with developmental genes in Drosophila
Costas J, Vieira CP, Casares F, Vieira J
BMC Genomics 2003, 4: 52
(16 December 2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
22.


Research    
Computational identification of Drosophila microRNA genes
Lai EC, Tomancak P, Williams RW, Rubin GM
Genome Biology 2003, 4(7):R42
(30 June 2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
23.


Minireview    
Impressive expressions: developing a systematic database of gene-expression patterns in Drosophila embryogenesis
Montalta-He H, Reichert H
Genome Biology 2003, 4(2):205
(28 January 2003)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
24.


Research    
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly
Hoskins RA, Smith CD, Carlson JW, Carvalho AB, Halpern A, Kaminker JS, Kennedy C, Mungall CJ, Sullivan BA, Sutton GG, Yasuhara JC, Wakimoto BT, Myers EW, Celniker SE, Rubin GM, Karpen GH
Genome Biology 2002, 3(12):research0085.1 - 0085.16
(31 December 2002)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
25.


Research    
Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome
Bergman CM, Pfeiffer BD, Rincón-Limas DE, Hoskins RA, Gnirke A, Mungall CJ, Wang AM, Kronmiller B, Pacleb J, Park S, Stapleton M, Wan K, George RA, de Jong PJ, Botas J, Rubin GM, Celniker SE
Genome Biology 2002, 3(12):research0086.1 - 0086.20
(30 December 2002)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
26.


Research    
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
Kaminker JS, Bergman CM, Kronmiller B, Carlson J, Svirskas R, Patel S, Frise E, Wheeler DA, Lewis SE, Rubin GM, Ashburner M, Celniker SE
Genome Biology 2002, 3(12):research0084.1 - 0084.20
(23 December 2002)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
27.


Software    
An integrated computational pipeline and database to support whole-genome sequence annotation
Mungall CJ, Misra S, Berman BP, Carlson J, Frise E, Harris N, Marshall B, Shu S, Kaminker JS, Prochnik SE, Smith CD, Smith E, Tupy JL, Wiel C, Rubin GM, Lewis SE
Genome Biology 2002, 3(12):research0081.1 - 0081.11
(23 December 2002)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
28.


Research    
A Drosophila full-length cDNA resource
Stapleton M, Carlson J, Brokstein P, Yu C, Champe M, George R, Guarin H, Kronmiller B, Pacleb J, Park S, Wan K, Rubin GM, Celniker SE
Genome Biology 2002, 3(12):research0080.1 - 0080.8
(23 December 2002)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
29.


Research    
Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
Celniker SE, Wheeler DA, Kronmiller B, Carlson JW, Halpern A, Patel S, Adams M, Champe M, Dugan SP, Frise E, Hodgson A, George RA, Hoskins RA, Laverty T, Muzny DM, Nelson CR, Pacleb JM, Park S, Pfeiffer BD, Richards S, Sodergren EJ, Svirskas R, Tabor PE, Wan K, Stapleton M, Sutton GG, Venter C, Weinstock G, Scherer SE, Myers EW, Gibbs RA, Rubin GM
Genome Biology 2002, 3(12):research0079.1 - 0079.14
(23 December 2002)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
30.




Software    
Apollo: a sequence annotation editor
Lewis SE, Searle SMJ, Harris N, Gibson M, Iyer V, Richter J, Wiel C, Bayraktaroglu L, Birney E, Crosby MA, Kaminker JS, Matthews BB, Prochnik SE, Smith CD, Tupy JL, Rubin GM, Misra S, Mungall CJ, Clamp ME
Genome Biology 2002, 3(12):research0082.1 - 0082.14
(23 December 2002)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]
31.


Research    
Computational analysis of core promoters in the Drosophila genome
Ohler U, Liao G, Niemann H, Rubin GM
Genome Biology 2002, 3(12):research0087.1 - 0087.12
(20 December 2002)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

This article is also cited by a further 36 articles in PubMed Central

  
printer friendly 
to  [Help]
Terms and Conditions Privacy statement Information for advertisers Jobs at BMC Contact us
© 1999-2010 BioMed Central Ltd unless otherwise stated. Part of Springer Science+Business Media.