Log on / register
BioMed Central home | Journals A-Z | Feedback | Support | My details
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.
Koonin EV, Fedorova ND, Jackson JD, Jacobs AR, Krylov DM, Makarova KS, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Rogozin IB, Smirnov S, Sorokin AV, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA
Genome Biol 2004, 5: R7
[Full text] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]

printer friendly 
to  [Help]

BioMed Central articles that cite the above article:

1.
35%35%


Methodology article    
Conserved co-expression for candidate disease gene prioritization
Oti M, van Reeuwijk J, Huynen MA, Brunner HG
BMC Bioinformatics 2008, 9: 208
(23 April 2008)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
2.
35%35%


Research    
Quantification of ortholog losses in insects and vertebrates
Wyder S, Kriventseva EV, Schröder R, Kadowaki T, Zdobnov EM
Genome Biology 2007, 8(11):R242
(16 November 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
3.
35%35%


Research article    
Poly-G/poly-C tracts in the genomes of Caenorhabditis
Zhao Y, O'Neil NJ, Rose AM
BMC Genomics 2007, 8: 403
(7 November 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
4.
35%35%


Research article    
Functional and evolutionary analysis of alternatively spliced genes is consistent with an early eukaryotic origin of alternative splicing
Irimia M, Rukov JL, Penny D, Roy SW
BMC Evolutionary Biology 2007, 7: 188
(4 October 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
5.
35%35%


Research article    
The complement of protein kinases of the microsporidium Encephalitozoon cuniculi in relation to those of Saccharomyces cerevisiae and Schizosaccharomyces pombe
Miranda-Saavedra D, Stark MJR, Packer JC, Vivares CP, Doerig C, Barton GJ
BMC Genomics 2007, 8: 309
(4 September 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
6.
35%35%


Research article    
Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects
Wägele JW, Mayer C
BMC Evolutionary Biology 2007, 7: 147
(28 August 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
7.
35%35%


Research    
Evolutionary history and functional implications of protein domains and their combinations in eukaryotes
Itoh M, Nacher JC, Kuma K, Goto S, Kanehisa M
Genome Biology 2007, 8(6):R121
(25 June 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
8.
35%35%


Methodology article    
Orthology prediction at scalable resolution by phylogenetic tree analysis
van der Heijden RTJM, Snel B, van Noort V, Huynen MA
BMC Bioinformatics 2007, 8: 83
(8 March 2007)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
9.
35%35%


Hypothesis    
Diverse bacterial genomes encode an operon of two genes, one of which is an unusual class-I release factor that potentially recognizes atypical mRNA signals other than normal stop codons
Baranov PV, Vestergaard B, Hamelryck T, Gesteland RF, Nyborg J, Atkins JF
Biology Direct 2006, 1: 28
(13 September 2006)
[Abstract] [Full Text] [PDF] [PubMed] [Related articles] [1 comment]
10.
35%35%




Research    
Combinatorial RNA interference in Caenorhabditis elegans reveals that redundancy between gene duplicates can be maintained for more than 80 million years of evolution
Tischler J, Lehner B, Chen N, Fraser AG
Genome Biology 2006, 7(8):R69
(2 August 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [F1000 Biology] [Cited on BioMed Central]
11.
35%35%


Research article    
Generation, annotation and analysis of ESTs from Trichoderma harzianum CECT 2413
Vizcaíno JA, González FJ, Suárez MB, Redondo J, Heinrich J, Delgado-Jarana J, Hermosa R, Gutiérrez S, Monte E, Llobell A, Rey M
BMC Genomics 2006, 7: 193
(27 July 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
12.
35%35%


Research article    
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hon GC, Myers CL, Parsons A, Friesen H, Oughtred R, Tong A, Stark C, Ho Y, Botstein D, Andrews B, Boone C, Troyanskya OG, Ideker T, Dolinski K, Batada NN, Tyers M
Journal of Biology 2006, 5: 11
(8 June 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
13.
35%35%


Research    
The gain and loss of genes during 600 million years of vertebrate evolution
Blomme T, Vandepoele K, De Bodt S, Simillion C, Maere S, Van de Peer Y
Genome Biology 2006, 7(5):R43
(24 May 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
14.
35%35%


Method    
Identifying repeat domains in large genomes
Zhi D, Raphael BJ, Price AL, Tang H, Pevzner PA
Genome Biology 2006, 7(1):R7
(31 January 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
15.
35%35%


Research article    
A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation
Dutilh BE, Huynen MA, Snel B
BMC Genomics 2006, 7: 10
(19 January 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
16.
35%35%


Research article    
Eleven ancestral gene families lost in mammals and vertebrates while otherwise universally conserved in animals
Danchin EGJ, Gouret P, Pontarotti P
BMC Evolutionary Biology 2006, 6: 5
(18 January 2006)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
17.
35%35%


Research article    
Human Lsg1 defines a family of essential GTPases that correlates with the evolution of compartmentalization
Reynaud EG, Andrade MA, Bonneau F, Ly TBN, Knop M, Scheffzek K, Pepperkok R
BMC Biology 2005, 3: 21
(7 October 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
18.
35%35%


Database    
XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR
BMC Genomics 2005, 6: 123
(14 September 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
19.
35%35%


Software    
FIGENIX: Intelligent automation of genomic annotation: expertise integration in a new software platform
Gouret P, Vitiello V, Balandraud N, Gilles A, Pontarotti P, Danchin EGJ
BMC Bioinformatics 2005, 6: 198
(5 August 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
20.
35%35%


Research article    
Evolutionary sequence analysis of complete eukaryote genomes
Blair JE, Shah P, Hedges SB
BMC Bioinformatics 2005, 6: 53
(11 March 2005)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
21.
35%35%


Research article    
An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage
Stuart GW, Berry MW
BMC Bioinformatics 2004, 5: 204
(17 December 2004)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
22.
35%35%


Research    
A Drosophila protein-interaction map centered on cell-cycle regulators
Stanyon CA, Liu G, Mangiola BA, Patel N, Giot L, Kuang B, Zhang H, Zhong J, Finley RL
Genome Biology 2004, 5(12):R96
(26 November 2004)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
23.
35%35%


Research article    
Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models
Karev GP, Wolf YI, Berezovskaya FS, Koonin EV
BMC Evolutionary Biology 2004, 4: 32
(9 September 2004)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
24.
35%35%


Method    
Large-scale exploration of growth inhibition caused by overexpression of genomic fragments in Saccharomyces cerevisiae
Boyer J, Badis G, Fairhead C, Talla E, Hantraye F, Fabre E, Fischer G, Hennequin C, Koszul R, Lafontaine I, Ozier-Kalogeropoulos O, Ricchetti M, Richard GF, Thierry A, Dujon B
Genome Biology 2004, 5(9):R72
(31 August 2004)
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
25.
35%35%


Research article    
Duplicated genes evolve slower than singletons despite the initial rate increase
Jordan IK, Wolf YI, Koonin EV
BMC Evolutionary Biology 2004, 4: 22
(6 July 2004)
[Abstract] [Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]

This article is also cited by a further 18 articles in PubMed Central


You can also check ISI Web of Science for additional citations (subscription required)
  
printer friendly 
to  [Help]

© 1999-2008 BioMed Central Ltd unless otherwise stated < info@genomebiology.com >   Terms and conditions