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Annotations for all by all - the BioSapiens network
Janet Thornton, the BioSapiens Network Genome Biology 2009, 10:401 (10 February 2009)
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Editor’s summary
The BioSapiens network has developed a distributed infrastructure for genome and proteome annotation
by laboratories anywhere in the world. |
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Protein function annotation by homology-based inference
Yaniv Loewenstein, Domenico Raimondo, Oliver C Redfern, James Watson, Dmitrij Frishman, Michal Linial, Christine Orengo, Janet Thornton, Anna Tramontano Genome Biology 2009, 10:207 (2 February 2009)
Abstract | Full text | PDF
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Editor’s summary
Where information on homologous proteins is available,
progress is being made in automated prediction of protein function
from sequence and structure. |
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Sequence-based feature prediction and annotation of proteins
Agnieszka S Juncker, Lars J Jensen, Andrea Pierleoni, Andreas Bernsel, Michael L Tress, Peer Bork, Gunnar von Heijne, Alfonso Valencia, Christos A Ouzounis, Rita Casadio, Søren Brunak Genome Biology 2009, 10:206 (2 February 2009)
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Editor’s summary
The combination of prediction tools in complex workflows and pipelines facilitates prediction of protein features from sequence. |
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Integrating sequence, evolution and functional genomics in regulatory genomics
Martin Vingron, Alvis Brazma, Richard Coulson, Jacques van Helden, Thomas Manke, Kimmo Palin, Olivier Sand, Esko Ukkonen Genome Biology 2009, 10:202 (30 January 2009)
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Editor’s summary
Finding transcription factor binding sites in regulatory regions of the genome |
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Identifying protein-coding genes in genomic sequences
Jennifer Harrow, Alinda Nagy, Alexandre Reymond, Tyler Alioto, Laszlo Patthy, Stylianos E Antonarakis, Roderic Guigó Genome Biology 2009, 10:201 (30 January 2009)
Abstract | Full text | PDF
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Editor’s summary
A review of the main computational pipelines used to generate the human reference protein-coding gene sets. |
