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A tree-based method for the rapid screening of chemical fingerprints
Thomas G Kristensen, Jesper Nielsen, Christian NS Pedersen Algorithms for Molecular Biology 2010, 5:9 (4 January 2010)
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Editor’s summary
Using a kD grid and Multibit tree to screen molecular fingerprint databases for chemical compounds with high similarity scores, based on the Tanimoto coefficient, is three times quicker than earlier methods, allowing researchers to identify novel drug candidates more efficiently.
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A simulation study comparing supertree and combined analysis methods using SMIDGen
M Shel Swenson, François Barbançon, Tandy Warnow, C Randal Linder Algorithms for Molecular Biology 2010, 5:8 (4 January 2010)
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Linear-time protein 3-D structure searching with insertions and deletions
Tetsuo Shibuya, Jesper Jansson, Kunihiko Sadakane Algorithms for Molecular Biology 2010, 5:7 (4 January 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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Back-translation for discovering distant protein homologies in the presence of frameshift mutations
Marta Gîrdea, Laurent Noé, Gregory Kucherov Algorithms for Molecular Biology 2010, 5:6 (4 January 2010)
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Fast prediction of RNA-RNA interaction
Raheleh Salari, Rolf Backofen, S Cenk Sahinalp Algorithms for Molecular Biology 2010, 5:5 (4 January 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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Mimosa: Mixture model of co-expression to detect modulators of regulatory interaction
Matthew Hansen, Logan Everett, Larry Singh, Sridhar Hannenhalli Algorithms for Molecular Biology 2010, 5:4 (4 January 2010)
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Phylogenetic comparative assembly
Peter Husemann, Jens Stoye Algorithms for Molecular Biology 2010, 5:3 (4 January 2010)
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Constructing majority-rule supertrees
Jianrong Dong, David Fernández-Baca, FR McMorris Algorithms for Molecular Biology 2010, 5:2 (4 January 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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A simple, practical and complete O![]() -time Algorithm for RNA folding using the Four-Russians Speedup
Yelena Frid, Dan Gusfield Algorithms for Molecular Biology 2010, 5:13 (4 January 2010)
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FlexSnap: Flexible Non-sequential Protein Structure Alignment
Saeed Salem, Mohammed J Zaki, Chris Bystroff Algorithms for Molecular Biology 2010, 5:12 (4 January 2010)
Abstract | Full text | PDF | PubMed | Cited on BioMed Central
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Efficient algorithms for analyzing segmental duplications with deletions and inversions in genomes
Crystal L Kahn, Shay Mozes, Benjamin J Raphael Algorithms for Molecular Biology 2010, 5:11 (4 January 2010)
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A markov classification model for metabolic pathways
Timothy Hancock, Hiroshi Mamitsuka Algorithms for Molecular Biology 2010, 5:10 (4 January 2010)
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Refining transcriptional regulatory networks using network evolutionary models and gene histories
Xiuwei Zhang, Bernard ME Moret Algorithms for Molecular Biology 2010, 5:1 (4 January 2010)
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