 | .software |
Genome Biology publishes and distributes software, and may provide links to software available elsewhere. Descriptions of software may be subject to peer review as for primary research articles. All software articles are made available free to individuals through the web, and there are no restrictions on article length or on the types of information that can be included. The publication schedule is very fast, using electronic systems for article delivery, proofing and peer-review. For more details about how software is published in Genome Biology and for instructions for authors, see ' about refereed research'. |
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Software
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Software
 Anagha Joshi, Thomas Van Parys, Yves Van de Peer, Tom Michoel
(15 March 2010)
Pathicular  a Cytoscape plugin for analysing cellular responses to transcription factor perturbations is presented
[Abstract] [Provisional PDF]
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Software
 Morris A Swertz, K Joeri van der Velde, Bruno M Tesson, Richard A Scheltema, Danny Arends, Gonzalo Vera, Rudi Alberts, Martijn Dijkstra, Paul Schofield, Klaus Schughart, John M Hancock, Damian Smedley, Katy Wolstencroft, Carole Goble, Engbert O de Brock, Andrew R Jones, Helen Parkinson, Coordination of Mouse Informatics Resources Consortium (CASIMIR), Genotype-To-Phenotype Project (GEN2PHEN), Ritsert C Jansen
(9 March 2010)
XGAP, a software platform for the integration and analysis of genotype and phenotype data.
[Abstract] [Provisional PDF] [PubMed] [Related articles]
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Software
  Guoliang Li, Melissa J Fullwood, Han Xu, Fabianus Hendriyan Mulawadi, Stoyan Velkov, Vinsensius Vega, Pramila Nuwantha Ariyaratne, Yusoff Bin Mohamed, Hong-Sain Ooi, Chandana Tennakoon, Chia-Lin Wei, Yijun Ruan, Wing-Kin Sung
(25 February 2010)
ChIA-PET Tool can be used to process long-range chromatin interaction data. Results are visualized on a user-friendly genome browser.
[Abstract] [Provisional PDF] [PubMed] [Related articles]
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Software
  Andreas Ruepp, Andreas Kowarsch, Daniel Schmidl, Felix Buggenthin, Barbara Brauner, Irmtraud Dunger, Gisela Fobo, Goar Frishman, Corinna Montrone, Fabian J Theis
(20 January 2010)
PhenomiR is a comprehensive database of 542 studies reporting deregulation of miRNAs allowing large-scale statistical analysis of miRNA expression changes.
[Abstract] [Provisional PDF] [PubMed] [Related articles]
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Software
  Priit Adler, Raivo Kolde, Meelis Kull, Aleksandr Tkachenko, Hedi Peterson, Jüri Reimand, Jaak Vilo
(4 December 2009)
The MEM web resource allows users to search for co-expressed genes across all microarray datasets in the ArrayExpress database.
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
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Software
  Ben Langmead, Michael C Schatz, Jimmy Lin, Mihai Pop, Steven L Salzberg
(20 November 2009)
Novel software utilizing cloud computing technology to cost-effectively align and map SNPs from a human genome in three.
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
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Software
  Chunlei Wu, Camilo Orozco, Jason Boyer, Marc Leglise, James Goodale, Serge Batalov, Christopher L Hodge, James Haase, Jeff Janes, Jon W Huss III, Andrew I Su
(17 November 2009)
BioGPS is a community based customisable gene annotation portal bringing together gene annotation resources on to a single platform.
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
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Software
  Cizhong Jiang, B Franklin Pugh
(8 October 2009)
Different genome-wide reference maps of Saccharomyces cerevisiae nucleosome positions are compiled and can be visualized on a browser.
[Abstract] [Full text] [PDF] [PubMed] [Related articles]
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