Genome Biology publishes and distributes software, and may provide links to software available elsewhere. Descriptions of software may be subject to peer review as for primary research articles. All software articles are made available free to individuals through the web, and there are no restrictions on article length or on the types of information that can be included. The publication schedule is very fast, using electronic systems for article delivery, proofing and peer-review. For more details about how software is published in Genome Biology and for instructions for authors, see 'about refereed research'.

Software    

(15 March 2010)

Pathicular a Cytoscape plugin for analysing cellular responses to transcription factor perturbations is presented

Software    

(9 March 2010)

XGAP, a software platform for the integration and analysis of genotype and phenotype data.

Software    

(25 February 2010)

ChIA-PET Tool can be used to process long-range chromatin interaction data. Results are visualized on a user-friendly genome browser.

Software    

(20 January 2010)

PhenomiR is a comprehensive database of 542 studies reporting deregulation of miRNAs allowing large-scale statistical analysis of miRNA expression changes.

Software    

(4 December 2009)

The MEM web resource allows users to search for co-expressed genes across all microarray datasets in the ArrayExpress database.

Software    

(20 November 2009)

Novel software utilizing cloud computing technology to cost-effectively align and map SNPs from a human genome in three.

Software    

(17 November 2009)

BioGPS is a community based customisable gene annotation portal bringing together gene annotation resources on to a single platform.

Software    

(8 October 2009)

Different genome-wide reference maps of Saccharomyces cerevisiae nucleosome positions are compiled and can be visualized on a browser.