Genome Biology publishes and distributes software, and may provide links to software available elsewhere. Descriptions of software may be subject to peer review as for primary research articles. All software articles are made available free to individuals through the web, and there are no restrictions on article length or on the types of information that can be included. The publication schedule is very fast, using electronic systems for article delivery, proofing and peer-review. For more details about how software is published in Genome Biology and for instructions for authors, see 'about refereed research'.

Software    

(29 May 2009)

A software resource for the analysis of cell cycle related molecular networks.

Software    

(1 May 2009)

MotifAdjuster helps to detect errors in binding site annotations.

Software    

(19 April 2009)

A suite of computer programs to identify genome-wide chromatin conformation signatures with 5C technology is reported.

Software    

(19 April 2009)

EdgeExpressDB is a novel database and set of interfaces for interpreting biological networks and comparing large high-throughput expression datasets.

Software    

(12 March 2009)

TFCat is a catalog of mouse and human transcription factors based on a reliable core collection of annotations obtained by expert review of the scientific literature

Software    

(4 March 2009)

Bowtie: a new ultrafast memory-efficient tool for the alignment of short DNA sequence reads to large genomes.

Software    

(23 February 2009)

Paired-End Mapper (PEMer) enables mapping of genomic structural variants at considerably enhanced sensitivity, specificity and resolution over previous approaches.

Software    

(10 February 2009)

EpiGRAPH is a genome-scale data-mining software tool that enables users to identify epigenetic and gene regulatory features in large datasets of genomic regions.