Genome Biology publishes and distributes software, and may provide links to software available elsewhere. Descriptions of software may be subject to peer review as for primary research articles. All software articles are made available free to individuals through the web, and there are no restrictions on article length or on the types of information that can be included. The publication schedule is very fast, using electronic systems for article delivery, proofing and peer-review. For more details about how software is published in Genome Biology and for instructions for authors, see 'about refereed research'.

Software    

(12 November 2008)

ArrayPlex is a software package that centrally provides a large number of flexible toolsets useful for functional genomics.

Software    

(8 October 2008)

Three tools for simulating genome evolution are presented: for neutrally evolving DNA, for phylogenetic context-free grammars and for richly structured syntenic blocks of genome sequence.

Software    

(18 September 2008)

NetGrep is a system for searching protein interaction networks for matches to user-supplied network schemas.

Software    

(3 August 2008)

Proteopedia is an interactive wiki-style web resource that presents 3D structural and functional information in a user-friendly manner and allows real-time community annotation.

Software    

(15 August 2008)

MotifCluster finds related motifs in a set of sequences and clusters the sequences into families using the motifs they contain.

Software    

(24 July 2008)

MeV+R provides users with point-and-click access to traditionally command-line-driven tools written in R.

Software    

(20 June 2008)

GMODWeb is a software framework designed to speed the development of websites for model organism databases.

Software    

(12 June 2008)

Anni 2.0 provides an ontology-based interface to MEDLINE.