Articles
Volume 11 Supplement 1
Beyond the Genome: The true gene count, human evolution and disease genomics
Meeting abstracts
Beyond the Genome: The true gene count, human evolution and disease genomics
Boston, MA, USA
11-13 October 2010
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Invited speaker presentation
Between a chicken and a grape: estimating the number of human genes Mihaela Pertea, Steven L Salzberg Genome Biology 2010, 11(Suppl 1):I1 (11 October 2010) |
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Invited speaker presentation
George Church Genome Biology 2010, 11(Suppl 1):I2 (11 October 2010) |
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Invited speaker presentation
Next-generation cancer genomics Elaine R Mardis, The Washington University Cancer Genome Initiative project team Genome Biology 2010, 11(Suppl 1):I3 (11 October 2010) |
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Invited speaker presentation
Alison P Klein Genome Biology 2010, 11(Suppl 1):I4 (11 October 2010) |
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Invited speaker presentation
Steven JM Jones, Janessa Laskin, Yvonne Y Li, Obi L Griffith, Jianghong An, Mikhail Bilenky, Yaron S Butterfield, Eric Chuah, Richard Corbett, Anthony Fejes, Simon Chan, Nancy Liao, Katayoon Kasaian, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D Morin, Trevor J Pugh, Tesa Severson, Sohrab P Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A Moore, David G Huntsman, Inanc Birol, Martin Hirst, Robert A Holt, Marco A Marra et al. Genome Biology 2010, 11(Suppl 1):I5 (11 October 2010) |
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Invited speaker presentation
Abstract not submitted for online publication Craig Thompson Genome Biology 2010, 11(Suppl 1):I6 (11 October 2010) |
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Invited speaker presentation
Large-scale identification of tissue-specific enhancers Len A Pennacchio Genome Biology 2010, 11(Suppl 1):I7 (11 October 2010) |
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Invited speaker presentation
Olivier Harismendy, Gaurav Bhatia, Nazli G Rahim, Vikas Bansal, Masakazu Nakano, Michael Scott, Xiaoyun Wang, Colette Dib, Edouard Turlotte, Nathaniel Heintzman, Sarah S Murray, Jean-Francois Deleuze, Jack C Sipe, Bing Ren, Vineet Bafna, Eric J Topol, Kelly A Frazer Genome Biology 2010, 11(Suppl 1):I8 (11 October 2010) |
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Invited speaker presentation
Abstract not submitted for online publication Michele Clamp Genome Biology 2010, 11(Suppl 1):I9 (11 October 2010) |
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Invited speaker presentation
Most of the 6.5% - 10% of human DNA bases that are functional now will soon be turned over Chris P Ponting, Stephen J Meader, Gerton Lunter Genome Biology 2010, 11(Suppl 1):I10 (11 October 2010) |
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Invited speaker presentation
The developmental transcriptome of Brenton Graveley Genome Biology 2010, 11(Suppl 1):I11 (11 October 2010) |
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Invited speaker presentation
Transcriptomics in a high throughput world Chad Nusbaum Genome Biology 2010, 11(Suppl 1):I12 (11 October 2010) |
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Invited speaker presentation
Synthetic and sequencing-based approaches to high-throughput genetic analysis Jay Shendue Genome Biology 2010, 11(Suppl 1):I13 (11 October 2010) |
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Invited speaker presentation
Helicos single molecule sequencing: unique capabilities and importance for molecular diagnostics Patrice M Milos Genome Biology 2010, 11(Suppl 1):I14 (11 October 2010) |
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Invited speaker presentation
Translational medicine and the human microbiome Rob Knight Genome Biology 2010, 11(Suppl 1):I15 (11 October 2010) |
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Invited speaker presentation
Abstract not submitted for online publication Stephan Schuster Genome Biology 2010, 11(Suppl 1):I16 (11 October 2010) |
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Invited speaker presentation
Exploring the human gut microbiome Jun Wang Genome Biology 2010, 11(Suppl 1):I17 (11 October 2010) |
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Invited speaker presentation
Skin microbiome in health and disease Julie A Segre, Elizabeth A Grice, Heidi H Kong, Sean Conlan, Evan Snitkin, Lilia Mijares, Patrick Murray, Eric D Green, Maria L Turner Genome Biology 2010, 11(Suppl 1):I18 (11 October 2010) |
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Invited speaker presentation
The rare biosphere: sorting out fact from fiction Mitchell L Sogin, Hilary Morrison, Sandra McLellan, David Welch, Sue Huse Genome Biology 2010, 11(Suppl 1):I19 (11 October 2010) |
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Invited speaker presentation
Genomic variation and adaptation in Africa: implications for human evolutionary history and disease Sarah A Tishkoff, Michael Campbell, Jibril Hirbo, Joe Jarvis, Wen-Ya Ko, Charla Lambert, Alessia Ranciaro, Laura Scheinfeldt, Sameer Soi Genome Biology 2010, 11(Suppl 1):I20 (11 October 2010) |
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Invited speaker presentation
Reconstructing sex chromosome evolution David C Page, Jennifer F Hughes, Daniel W Bellott, Jacob L Mueller, Mark E Gill, Amanda Larracuente, Tina Graves, Donna Muzny, Wesley C Warren, Richard A Gibbs, Richard K Wilson, Helen Skaletsky Genome Biology 2010, 11(Suppl 1):I21 (11 October 2010) |
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Invited speaker presentation
Mining data from 1000 genomes to identify the causal variant in regions under positive selection Shari Grossman, Ilya Shlyakhter, Elinor K Karlsson, Shervin Tabrizi, Kristian Andersen, John Rinn, Eric Lander, Steve Schaffner, Pardis C Sabeti, The 1000 Genomes Project Genome Biology 2010, 11(Suppl 1):I22 (11 October 2010) |
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Invited speaker presentation
Elaine A Ostrander, Adam Boyko, Pascale Quignon, Lin Li, Jeffrey J Schoenebeck, Jeremiah D Degenhardt, Kurt E Lohmueller, Keyan Zhao, Abra Brisbin, Heidi G Parker, Bridgett M Von Holdt, Michelle Cargill, Adam Auton, Andy Reynolds, Abdel G Elkahloun, Dana S Mosher, Nathan B Sutter, John Novembre, Melissa J Hubisz, Adam Siepel, Robert K Wayne, Carlos D Bustamante Genome Biology 2010, 11(Suppl 1):I23 (11 October 2010) |
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Selected oral presentation
From identification to validation to gene count Clara Amid, Adam Frankish, HAVANA, Bronwen Aken, Iakes Ezkurdia, Felix Kokocinsk, James Gilbert, Simon White, Piero Carninci, Thomas Gingeras, Roderic Guigo, Steve Searle, Michael L Tress, Jennifer Harrow, Tim Hubbard Genome Biology 2010, 11(Suppl 1):O1 (11 October 2010) |
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Selected oral presentation
Next-generation sequencing and the era of personal Y genomes Qasim Ayub, Luke Jostins, Yali Xue, Daniel Turner, Chris Tyler-Smith, The 1000 Genomes Consortium Genome Biology 2010, 11(Suppl 1):O2 (11 October 2010) |
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Selected oral presentation
Amanda M Casto, Marcus W Feldman Genome Biology 2010, 11(Suppl 1):O3 (11 October 2010) |
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Selected oral presentation
Francisco M De La Vega, Katarzyna Bryc, Jeremiah D Degehnardt, Shaila Musharoff, Jeffrey M Kidd, Vrunda Seth, Sarah Stanley, Abra Brisbin, Alon Keinan, Andrew Clark, Carlos D Bustamante Genome Biology 2010, 11(Suppl 1):O4 (11 October 2010) |
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Selected oral presentation
Defining the human reference protein-coding gene set Suganthi Balasubramanian, Lukas Habegger, Adam Frankish, Daniel MacArthur, Rachel Harte, Chris Tyler-Smith, Jennifer Harrow, Mark Gerstein Genome Biology 2010, 11(Suppl 1):O5 (11 October 2010) |
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Selected oral presentation
A genomewide ordered-subset linkage analysis for alcohol dependence in African-Americans Shizhong Han, Bao-Zhu Yang, Henry R Kranzler, Joel Gelernter Genome Biology 2010, 11(Suppl 1):O6 (11 October 2010) |
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Selected oral presentation
Statistical methods for comparing the abundances of metabolic pathways in metagenomics Bo Liu, Mihai Pop Genome Biology 2010, 11(Suppl 1):O7 (11 October 2010) |
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Selected oral presentation
The genetic structure of south Asian populations as revealed by 650 000 SNPs Mait Metspalu, Gyaneshwer Chaubey, Bayazit Yunusbayev, Irene Romero, Monika Karmin, Chandana Mallick, Ene Metspalu, Sadagopal Shanmugalakshmi, Karuppiah Balakrishnan, Kumarasamy Thangaraj, Lalji Singh, Ramasamy Pitchappan, Toomas Kivisild, Richard Villems Genome Biology 2010, 11(Suppl 1):O8 (11 October 2010) |
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Selected oral presentation
Candidate genes and biological processes in Hyun J Noh, Christian R Marshall, Dalila Pinto, Stephen W Scherer, Chris P Ponting, Caleb Webber Genome Biology 2010, 11(Suppl 1):O9 (11 October 2010) |
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Selected oral presentation
Ruibin Xi, Joe Luquette, Angela Hadjipanayis, Tae-Min Kim, Peter J Park Genome Biology 2010, 11(Suppl 1):O10 (11 October 2010) |
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Selected oral presentation
Harukazu Suzuki, Piero Carninci, Carsten Daub, Jun Kawai, Yoshihide Hayashizaki Genome Biology 2010, 11(Suppl 1):O11 (11 October 2010) |
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Selected oral presentation
Beyond the genome (BTG) is a (PGDB) pathway genome database: HumanCyc Miles Trupp, Tomer Altman, Carol A Fulcher, Ron Caspi, Markus Krummenacker, Suzanne Paley, Peter D Karp Genome Biology 2010, 11(Suppl 1):O12 (11 October 2010) |
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Selected oral presentation
A data analysis and coordination center for the human microbiome project Jennifer Wortman, Michelle Giglio, Heather Creasy, Amy Chen, Konstantinos Liolios, Ken Chu, Noam Davidovics, Mark Mazaitis, Todd DeSantis, Navjeet Singh, Joshua Orvis, Jonathan Crabtree, Victor Felix, Catherine Jordan, Anup Mahurkar, Rob Knight, Gary Andersen, Nikos Kyrpides, Victor Markowitz, Owen White Genome Biology 2010, 11(Suppl 1):O13 (11 October 2010) |
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Poster presentation
High-efficiency gene targeting in a human pre-B cell line: towards the human gene knockout project Noritaka Adachi Genome Biology 2010, 11(Suppl 1):P1 (11 October 2010) |
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Poster presentation
The elastic analysis with galaxy on the cloud Enis Afgan, Dannon Baker, The Galaxy Team, Anton Nekrutenko, James Taylor Genome Biology 2010, 11(Suppl 1):P2 (11 October 2010) |
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Poster presentation
Analyzing and minimizing bias in Illumina sequencing libraries Daniel Aird, Wei-Shen Chen, Michael Ross, Kristen Connolly, Jim Meldrim, Carsten Russ, Sheila Fisher, David Jaffe, Chad Nusbaum, Andreas Gnirke Genome Biology 2010, 11(Suppl 1):P3 (11 October 2010) |
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Poster presentation
Design and assessment of binary DNA for nanopore sequencing Pelin Akan, Henrik Stranneheim, Preben Lexow, Joakim Lundeberg Genome Biology 2010, 11(Suppl 1):P4 (11 October 2010) |
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Poster presentation
Shafat Ali, Rupali Chopra, Shweta Aggarwal, Dheeraj Malhotra, Vijay K Garg, S N Bhattacharya, Rameshwar NK Bamezai Genome Biology 2010, 11(Suppl 1):P5 (11 October 2010) |
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Poster presentation
Ago-associated human usRNAs and other similar small RNAs Zhihua Li, Sang Kim, Yuefeng Lin, Patrick S Moore, Yuan Chang, Bino John Genome Biology 2010, 11(Suppl 1):P6 (11 October 2010) |
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Poster presentation
Steven Oden, Luciano Brocchieri Genome Biology 2010, 11(Suppl 1):P7 (11 October 2010) |
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Poster presentation
Single cell transcriptome analysis upon MCF-7 breast cancer Yih-Shien Chiang, Lock Seng, You-Yu Lin, Shih-Hao Chen, Yu-Chang Su, Tzu-Han Chen, Hong-Chih Kuo, Chung-Hsuan Chen, Kuo Chiu Genome Biology 2010, 11(Suppl 1):P8 (11 October 2010) |
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Poster presentation
Dawn Ciulla, Georgia Giannoukos, Ashlee Earl, Michael Feldgarden, Dirk Gevers, Joshua Levin, Jonathan Livny, Doyle Ward, Andreas Gnirke, Chad Nusbaum, Bruce Birren Genome Biology 2010, 11(Suppl 1):P9 (11 October 2010) |
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Poster presentation
DNA secondary structures and epigenetic determinants of cancer genome evolution Subhajyoti De, Franziska Michor Genome Biology 2010, 11(Suppl 1):P10 (11 October 2010) |
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Poster presentation
Toshinori Endo, Keisuke Ueno, Kouki Yonezawa, Katsuhiko Mineta, Kohji Hotta, Yutaka Satou, Lixy Yamada, Michio Ogasawara, Hiroki Takahashi, Ayako Nakajima, Mia Nakachi, Mamoru Nomura, Junko Yaguchi, Alu Konno, Yasunori Sasakura, Akiyasu C Yoshizawa, Hisaaki Taniguchi, Chisato Yamasaki, Miho Sera, Tadashi Imanishi, Kazuo Inaba Genome Biology 2010, 11(Suppl 1):P11 (11 October 2010) |
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Poster presentation
The evolutionary dynamics of protein networks Hai Fang, Julian Gough Genome Biology 2010, 11(Suppl 1):P12 (11 October 2010) |
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Poster presentation
Liliana Florea, Alexander Souvorov, Steven L Salzberg Genome Biology 2010, 11(Suppl 1):P13 (11 October 2010) |
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Poster presentation
Reprogramming the human cancer cell nucleus John Frenster, Jeannette Hovsepian Genome Biology 2010, 11(Suppl 1):P14 (11 October 2010) |
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Poster presentation
L-Systems: a mathematical paradigm for designing full length human genes and genomes Arunava Goswami, Pabitra Pal Choudhury, Amita Pal, R L Brahmachary, Sk Hassan Genome Biology 2010, 11(Suppl 1):P15 (11 October 2010) |
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Poster presentation
The A V E S T A G E N O M E project™ - a discovery model for disease genomics and beyond S N Guzder, Renuka Jain, Naveen Sharma, Chellappa Gopalkrishnan, Yasmin Shah, Villoo Morawala-Patell Genome Biology 2010, 11(Suppl 1):P16 (11 October 2010) |
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Poster presentation
Mohamed Helmy, Naoyuki Sugiyama, Masaru Tomita, Yasushi Ishihama Genome Biology 2010, 11(Suppl 1):P17 (11 October 2010) |
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Poster presentation
Matthew R Henn, Niall J Lennon, Ruchi Newman, Patrick Charlebois, Christian Boutwell, Molly OhAinle, Aaron Berlin, Elizabeth Ryan, Christine Malboeuf, Alex Macalalad, Monica Casali, Rachel Erlich, Henry Bigelow, Lisa Green, Sante Gnerre, Sarah Young, Joshua Levin, Chad Nusbaum, Bruce D Walker, Michael S Diamond, Laura D Kramer, Gregory D Ebel, Eva Harris, Todd M Allen, Bruce W Birren Genome Biology 2010, 11(Suppl 1):P18 (11 October 2010) |
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Poster presentation
Profiling post-translational modifications of proteins that regulate gene expression Peter Hornbeck, Ela Skrzypek, Bin Zhang, Jon Kornhauser, Sasha Tkachev, Beth Murray, Vaughan Latham Genome Biology 2010, 11(Suppl 1):P19 (11 October 2010) |
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Poster presentation
Evolution of haplotypes at Somwang Janyakhantikul, Danielle Carpenter, John AL Armour Genome Biology 2010, 11(Suppl 1):P20 (11 October 2010) |
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Poster presentation
Constance Jeffery Genome Biology 2010, 11(Suppl 1):P21 (11 October 2010) |
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Poster presentation
Robert C Karn, Janet M Young, Christina M Laukaitis Genome Biology 2010, 11(Suppl 1):P22 (11 October 2010) |
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Poster presentation
CDCOCA: a statistical method to define complexity dependent co-occurring chromosomal aberrations Nitin Kumar, Hubert Rehrauer, Haoyang Ca, Michael Baudis Genome Biology 2010, 11(Suppl 1):P23 (11 October 2010) |
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Poster presentation
Identifying gene copy number variants associated with colorectal adenoma recurrence Christina M Laukaitis, Patricia Thompson, Maria Martinez, Eugene W Gerner Genome Biology 2010, 11(Suppl 1):P24 (11 October 2010) |
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Poster presentation
Eric Letouzé, Yves Allory, Marc A Bollet, François Radvanyi, Frédéric Guyon Genome Biology 2010, 11(Suppl 1):P25 (11 October 2010) |
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Poster presentation
Development and evaluation of RNA-seq methods Joshua Levin, Xian Adiconis, Moran Yassour, Dawn Thompson, Mitchell Guttman, Michael Berger, Lin Fan, Nir Friedman, Chad Nusbaum, Andreas Gnirke, Aviv Regev Genome Biology 2010, 11(Suppl 1):P26 (11 October 2010) |
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Poster presentation
MamPhEA: a web tool for mammalian phenotype enrichment analysis Meng-Pin Weng, Ben-Yang Liao Genome Biology 2010, 11(Suppl 1):P27 (11 October 2010) |
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Poster presentation
Visualization, mapping and sequencing of megabase lengths of DNA Kalim Mir, Liqin Dong, David Bauer, Giuseppe Scozzafava Genome Biology 2010, 11(Suppl 1):P28 (11 October 2010) |
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Poster presentation
Amy Olex, Richard Loeser, Jeff Chou, Mike Callahan, Cristin Ferguson, Jacquelyn S Fetrow Genome Biology 2010, 11(Suppl 1):P29 (11 October 2010) |
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Poster presentation
DNA barcode profiling: a new platform for the investigation of genome integrity M L Pedersen Genome Biology 2010, 11(Suppl 1):P30 (11 October 2010) |
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Poster presentation
Transcriptome profiling from formalin-fixed, paraffin-embedded tumor specimens by RNA-seq Kunbin Qu, John Morlan, Jim Stephans, Xitong Li, Joffre Baker, Dominick Sinicropi Genome Biology 2010, 11(Suppl 1):P31 (11 October 2010) |
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Poster presentation
Comprehensive analysis of the molecular bases of OCA in Indians Kunal Ray, Mainak Sengupta, Moumita Chaki, Maitreyee Mondal, Swapan Samanta Genome Biology 2010, 11(Suppl 1):P32 (11 October 2010) |
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Poster presentation
A role for statin therapy in Alzheimer's disease David Richards Genome Biology 2010, 11(Suppl 1):P33 (11 October 2010) |
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Poster presentation
Genomic alterations in breast cancer patients from Northeast India using 10K SNP arrays Sunita Saxena, Mishi Kaushal, Jaganath Sharma, Eric Zomawia, Sujala Kapur Genome Biology 2010, 11(Suppl 1):P34 (11 October 2010) |
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Poster presentation
Complete RNA-seq analysis of cancer transcriptomes from FFPE samples Shujun Luo, Irina Khrebtukova, Chuck Perou, Gary P Schroth Genome Biology 2010, 11(Suppl 1):P35 (11 October 2010) |
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Poster presentation
S Searle, A Frankish, A Bignell, B Aken, T Derrien, M Diekhans, R Harte, C Howald, F Kokocinski, M Lin, M Tress, M Van Baren, I Barnes, T Hunt, D Carvalho-Silva, C Davidson, S Donaldson, J Gilbert, M Kay, D Lloyd, J Loveland, J Mudge, C Snow, J Vamathevan, L Wilming, M Brent, M Gerstein, R Guigó, M Kellis, A Reymond, A Zadissa, A Valencia, J Harrow, T Hubbard et al. Genome Biology 2010, 11(Suppl 1):P36 (11 October 2010) |
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Poster presentation
Diverse somatic mutation patterns and pathway alterations in human cancers Zhengyan Kan, Bijay S Jaiswal, Somasekar Seshagiri Genome Biology 2010, 11(Suppl 1):P37 (11 October 2010) |
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Poster presentation
Rachele Cagliani, Stefania Riva, Matteo Fumagalli, Uberto Pozzoli, Giacomo P Comi, Nereo Bresolin, Mario Clerici, Manuela Sironi Genome Biology 2010, 11(Suppl 1):P38 (11 October 2010) |
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Poster presentation
Making cancer transcriptome sequencing assays practical for the research and clinical scientist Todd M Smith, N Olson, David Smith Genome Biology 2010, 11(Suppl 1):P39 (11 October 2010) |
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Poster presentation
Jialin Sun Genome Biology 2010, 11(Suppl 1):P40 (11 October 2010) |
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Poster presentation
Agata Wesolowska, Marlene D Dalgaard, Louise Borst, Laurent Gautier, Mads Bak, Nils Weinhold, Betina F Nielsen, Jacob Nersting, Niels Tommerup, Søren Brunak, Thomas Ponten, Henrik Leffers, Kjeld Schmiegelow, Ramneek Gupta Genome Biology 2010, 11(Suppl 1):P41 (11 October 2010) |
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Poster presentation
Zongli Zheng, Anders F Andersson, Weimin Ye, Olof Nyrén, Staffan Normark, Lars Engstrand Genome Biology 2010, 11(Suppl 1):P42 (11 October 2010) |
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Poster presentation
Evolution of the protein domain repertoire of eukaryotes reveals strong functional patterns Christian M Zmasek, Adam Godzik Genome Biology 2010, 11(Suppl 1):P43 (11 October 2010) |
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Poster presentation
Genomic patient information management system D Dharmiah, M Narasinga Rao, Ravikiran , N Sandeep, V DS Gopal, Allam Appa Rao, GR Sridhar Genome Biology 2010, 11(Suppl 1):P44 (4 November 2010) |
