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Genome Biology publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 7 Suppl 1
EGASP '05: ENCODE Genome Annotation Assessment Project
Research
Edited by Roderic Guigó, Martin G Reese

Introduction    
EGASP: Introduction
Martin G Reese, Roderic Guigó
Genome Biology 2006, 7(Suppl 1):S1 (7 August 2006)
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Review    
EGASP: the human ENCODE Genome Annotation Assessment Project
Roderic Guigó, Paul Flicek, Josep F Abril, Alexandre Reymond, Julien Lagarde, France Denoeud, Stylianos Antonarakis, Michael Ashburner, Vladimir B Bajic, Ewan Birney, Robert Castelo, Eduardo Eyras, Catherine Ucla, Thomas R Gingeras, Jennifer Harrow, Tim Hubbard, Suzanna E Lewis, Martin G Reese
Genome Biology 2006, 7(Suppl 1):S2 (7 August 2006)
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Review    
Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment
Vladimir B Bajic, Michael R Brent, Randall H Brown, Adam Frankish, Jennifer Harrow, Uwe Ohler, Victor V Solovyev, Sin Lam Tan
Genome Biology 2006, 7(Suppl 1):S3 (7 August 2006)
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Research    
GENCODE: producing a reference annotation for ENCODE
Jennifer Harrow, France Denoeud, Adam Frankish, Alexandre Reymond, Chao-Kung Chen, Jacqueline Chrast, Julien Lagarde, James GR Gilbert, Roy Storey, David Swarbreck, Colette Rossier, Catherine Ucla, Tim Hubbard, Stylianos E Antonarakis, Roderic Guigo
Genome Biology 2006, 7(Suppl 1):S4 (7 August 2006)
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Research    
Pairagon+N-SCAN_EST: a model-based gene annotation pipeline
Manimozhiyan Arumugam, Chaochun Wei, Randall H Brown, Michael R Brent
Genome Biology 2006, 7(Suppl 1):S5 (7 August 2006)
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Research    
Vertebrate gene finding from multiple-species alignments using a two-level strategy
David Carter, Richard Durbin
Genome Biology 2006, 7(Suppl 1):S6 (7 August 2006)
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Research    
Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA
Sarah Djebali, Franck Delaplace, Hugues Roest Crollius
Genome Biology 2006, 7(Suppl 1):S7 (7 August 2006)
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Research    
Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts
Paul Flicek, Michael R Brent
Genome Biology 2006, 7(Suppl 1):S8 (7 August 2006)
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Research    
JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions
Jonathan E Allen, William H Majoros, Mihaela Pertea, Steven L Salzberg
Genome Biology 2006, 7(Suppl 1):S9 (7 August 2006)
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Research    
Automatic annotation of eukaryotic genes, pseudogenes and promoters
Victor Solovyev, Peter Kosarev, Igor Seledsov, Denis Vorobyev
Genome Biology 2006, 7(Suppl 1):S10 (7 August 2006)
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Research    
AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome
Mario Stanke, Ana Tzvetkova, Burkhard Morgenstern
Genome Biology 2006, 7(Suppl 1):S11 (7 August 2006)
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Research    
AceView: a comprehensive cDNA-supported gene and transcripts annotation
Danielle Thierry-Mieg, Jean Thierry-Mieg
Genome Biology 2006, 7(Suppl 1):S12 (7 August 2006)
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Research    
A computational approach for identifying pseudogenes in the ENCODE regions
Deyou Zheng, Mark B Gerstein
Genome Biology 2006, 7(Suppl 1):S13 (7 August 2006)
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