Genome Biology | Articles in Volume 7 Suppl 1

EGASP: Introduction
Martin G Reese, Roderic Guigó
Genome Biology 2006, 7(Suppl 1):S1 (7 August 2006)
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Review

EGASP: the human ENCODE Genome Annotation Assessment Project
Roderic Guigó, Paul Flicek, Josep F Abril, Alexandre Reymond, Julien Lagarde, France Denoeud, Stylianos Antonarakis, Michael Ashburner, Vladimir B Bajic, Ewan Birney, Robert Castelo, Eduardo Eyras, Catherine Ucla, Thomas R Gingeras, Jennifer Harrow, Tim Hubbard, Suzanna E Lewis, Martin G Reese
Genome Biology 2006, 7(Suppl 1):S2 (7 August 2006)
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Review

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment
Vladimir B Bajic, Michael R Brent, Randall H Brown, Adam Frankish, Jennifer Harrow, Uwe Ohler, Victor V Solovyev, Sin Lam Tan
Genome Biology 2006, 7(Suppl 1):S3 (7 August 2006)
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Research

GENCODE: producing a reference annotation for ENCODE
Jennifer Harrow, France Denoeud, Adam Frankish, Alexandre Reymond, Chao-Kung Chen, Jacqueline Chrast, Julien Lagarde, James GR Gilbert, Roy Storey, David Swarbreck, Colette Rossier, Catherine Ucla, Tim Hubbard, Stylianos E Antonarakis, Roderic Guigo
Genome Biology 2006, 7(Suppl 1):S4 (7 August 2006)
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Research

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline
Manimozhiyan Arumugam, Chaochun Wei, Randall H Brown, Michael R Brent
Genome Biology 2006, 7(Suppl 1):S5 (7 August 2006)
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Research

Vertebrate gene finding from multiple-species alignments using a two-level strategy
David Carter, Richard Durbin
Genome Biology 2006, 7(Suppl 1):S6 (7 August 2006)
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Research

Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA
Sarah Djebali, Franck Delaplace, Hugues Roest Crollius
Genome Biology 2006, 7(Suppl 1):S7 (7 August 2006)
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Research

Using several pair-wise informant sequences for de novo prediction of alternatively spliced transcripts
Paul Flicek, Michael R Brent
Genome Biology 2006, 7(Suppl 1):S8 (7 August 2006)
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Research

JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions
Jonathan E Allen, William H Majoros, Mihaela Pertea, Steven L Salzberg
Genome Biology 2006, 7(Suppl 1):S9 (7 August 2006)
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Research

Automatic annotation of eukaryotic genes, pseudogenes and promoters
Victor Solovyev, Peter Kosarev, Igor Seledsov, Denis Vorobyev
Genome Biology 2006, 7(Suppl 1):S10 (7 August 2006)
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Research

AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome
Mario Stanke, Ana Tzvetkova, Burkhard Morgenstern
Genome Biology 2006, 7(Suppl 1):S11 (7 August 2006)
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Research

AceView: a comprehensive cDNA-supported gene and transcripts annotation
Danielle Thierry-Mieg, Jean Thierry-Mieg
Genome Biology 2006, 7(Suppl 1):S12 (7 August 2006)
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Research

A computational approach for identifying pseudogenes in the ENCODE regions
Deyou Zheng, Mark B Gerstein
Genome Biology 2006, 7(Suppl 1):S13 (7 August 2006)
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