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Genome Biology publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 9 Suppl 1
Quantitative inference of gene function from diverse large-scale datasets
Research
Edited by Timothy R Hughes and Frederick P Roth

Introduction    
A race through the maze of genomic evidence
Timothy R Hughes, Frederick P Roth
Genome Biology 2008, 9(Suppl 1):S1 (27 June 2008)
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Research    
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
Lourdes Peña-Castillo, Murat Tasan, Chad L Myers, Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kyu Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Ning Lin, Gabriel F Berriz, Francis D Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David P Hill, David Warde-Farley, Chris Grouios, Debajyoti Ray, Judith A Blake, Minghua Deng, Michael I Jordan, William S Noble, Quaid Morris, Judith Klein-Seetharaman, Ziv Bar-Joseph, Ting Chen, Fengzhu Sun, Olga G Troyanskaya, Edward M Marcotte, Dong Xu, Timothy R Hughes, Frederick P Roth
Genome Biology 2008, 9(Suppl 1):S2 (27 June 2008)
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Research    
Predicting gene function in a hierarchical context with an ensemble of classifiers
Yuanfang Guan, Chad L Myers, David C Hess, Zafer Barutcuoglu, Amy A Caudy, Olga G Troyanskaya
Genome Biology 2008, 9(Suppl 1):S3 (27 June 2008)
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Method    
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
Sara Mostafavi, Debajyoti Ray, David Warde-Farley, Chris Grouios, Quaid Morris
Genome Biology 2008, 9(Suppl 1):S4 (27 June 2008)
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Method    
Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy
Wan Kyu Kim, Chase Krumpelman, Edward M Marcotte
Genome Biology 2008, 9(Suppl 1):S5 (27 June 2008)
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Method    
Consistent probabilistic outputs for protein function prediction
Guillaume Obozinski, Gert Lanckriet, Charles Grant, Michael I Jordan, William Stafford Noble
Genome Biology 2008, 9(Suppl 1):S6 (27 June 2008)
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Method    
Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function
Weidong Tian, Lan V Zhang, Murat Taan, Francis D Gibbons, Oliver D King, Julie Park, Zeba Wunderlich, J Michael Cherry, Frederick P Roth
Genome Biology 2008, 9(Suppl 1):S7 (27 June 2008)
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Research    
An en masse phenotype and function prediction system for Mus musculus
Murat Taan, Weidong Tian, David P Hill, Francis D Gibbons, Judith A Blake, Frederick P Roth
Genome Biology 2008, 9(Suppl 1):S8 (27 June 2008)
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