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Contents of Volume 9 Suppl 1
Quantitative inference of gene function from diverse large-scale datasets
Research
Edited by Timothy R Hughes and Frederick P Roth

Introduction    
A race through the maze of genomic evidence
Timothy R Hughes, Frederick P Roth
Genome Biology 2008, 9(Suppl 1):S1 (27 June 2008)
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Research    
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
Lourdes Peña-Castillo, Murat Tasan, Chad L Myers, Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kyu Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Ning Lin, Gabriel F Berriz, Francis D Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David P Hill, David Warde-Farley, Chris Grouios, Debajyoti Ray, Judith A Blake, Minghua Deng, Michael I Jordan, William S Noble, Quaid Morris, Judith Klein-Seetharaman, Ziv Bar-Joseph, Ting Chen, Fengzhu Sun, Olga G Troyanskaya, Edward M Marcotte, Dong Xu, Timothy R Hughes, Frederick P Roth
Genome Biology 2008, 9(Suppl 1):S2 (27 June 2008)
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Research    
Predicting gene function in a hierarchical context with an ensemble of classifiers
Yuanfang Guan, Chad L Myers, David C Hess, Zafer Barutcuoglu, Amy A Caudy, Olga G Troyanskaya
Genome Biology 2008, 9(Suppl 1):S3 (27 June 2008)
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Method    
GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function
Sara Mostafavi, Debajyoti Ray, David Warde-Farley, Chris Grouios, Quaid Morris
Genome Biology 2008, 9(Suppl 1):S4 (27 June 2008)
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Method    
Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy
Wan Kyu Kim, Chase Krumpelman, Edward M Marcotte
Genome Biology 2008, 9(Suppl 1):S5 (27 June 2008)
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Method    
Consistent probabilistic outputs for protein function prediction
Guillaume Obozinski, Gert Lanckriet, Charles Grant, Michael I Jordan, William Stafford Noble
Genome Biology 2008, 9(Suppl 1):S6 (27 June 2008)
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Method    
Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function
Weidong Tian, Lan V Zhang, Murat Taan, Francis D Gibbons, Oliver D King, Julie Park, Zeba Wunderlich, J Michael Cherry, Frederick P Roth
Genome Biology 2008, 9(Suppl 1):S7 (27 June 2008)
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Research    
An en masse phenotype and function prediction system for Mus musculus
Murat Taan, Weidong Tian, David P Hill, Francis D Gibbons, Judith A Blake, Frederick P Roth
Genome Biology 2008, 9(Suppl 1):S8 (27 June 2008)
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