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Genome Biology publishes selected collections of research articles, conference proceedings, reviews and reports as supplements, which are free to access online. All articles published in supplements are subject to peer review; meeting abstracts undergo review and selection by the conference. Find out more about publishing a supplement with BioMed Central.

Volume 9 Supplement 1

Quantitative inference of gene function from diverse large-scale datasets

Research

Edited by Timothy R Hughes and Frederick P Roth

Introduction   Free

A race through the maze of genomic evidence

Timothy R Hughes, Frederick P Roth Genome Biology 2008, 9(Suppl 1):S1 (27 June 2008)

Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access Highly Accessed

A critical assessment of Mus musculus gene function prediction using integrated genomic evidence

Lourdes Peña-Castillo, Murat Tasan, Chad L Myers, Hyunju Lee, Trupti Joshi, Chao Zhang, Yuanfang Guan, Michele Leone, Andrea Pagnani, Wan Kim, Chase Krumpelman, Weidong Tian, Guillaume Obozinski, Yanjun Qi, Sara Mostafavi, Guan Lin, Gabriel F Berriz, Francis D Gibbons, Gert Lanckriet, Jian Qiu, Charles Grant, Zafer Barutcuoglu, David P Hill, David Warde-Farley, Chris Grouios, Debajyoti Ray, Judith A Blake, Minghua Deng, Michael I Jordan, William S Noble, Quaid Morris, Judith Klein-Seetharaman, Ziv Bar-Joseph, Ting Chen, Fengzhu Sun, Olga G Troyanskaya, Edward M Marcotte, Dong Xu, Timothy R Hughes, Frederick P Roth et al. Genome Biology 2008, 9(Suppl 1):S2 (27 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

Predicting gene function in a hierarchical context with an ensemble of classifiers

Yuanfang Guan, Chad L Myers, David C Hess, Zafer Barutcuoglu, Amy A Caudy, Olga G Troyanskaya Genome Biology 2008, 9(Suppl 1):S3 (27 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Method   Open Access

GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function

Sara Mostafavi, Debajyoti Ray, David Warde-Farley, Chris Grouios, Quaid Morris Genome Biology 2008, 9(Suppl 1):S4 (27 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Method   Open Access

Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy

Wan Kim, Chase Krumpelman, Edward M Marcotte Genome Biology 2008, 9(Suppl 1):S5 (27 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Method   Open Access

Consistent probabilistic outputs for protein function prediction

Guillaume Obozinski, Gert Lanckriet, Charles Grant, Michael I Jordan, William Noble Genome Biology 2008, 9(Suppl 1):S6 (27 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Method   Open Access

Combining guilt-by-association and guilt-by-profiling to predict Saccharomyces cerevisiae gene function

Weidong Tian, Lan V Zhang, Murat Taşan, Francis D Gibbons, Oliver D King, Julie Park, Zeba Wunderlich, J Michael Cherry, Frederick P Roth Genome Biology 2008, 9(Suppl 1):S7 (27 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research   Open Access

An en masse phenotype and function prediction system for Mus musculus

Murat Taşan, Weidong Tian, David P Hill, Francis D Gibbons, Judith A Blake, Frederick P Roth Genome Biology 2008, 9(Suppl 1):S8 (27 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central


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