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Genome Biology publishes selected research, proceedings and collections of thematic reviews as supplements. All articles published in supplements are subject to peer review and are free to access online. The journal also publishes supplements containing meeting abstracts.
Contents of Volume 9 Suppl 2
The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge
Proceedings
from The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge
Madrid, Spain. 23-25 April 2007
Edited by Lynette Hirschman, Martin Krallinger, John Wilbur and Alfonso Valencia
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Research
Overview of BioCreative II gene mention recognition
Larry Smith, Lorraine K Tanabe, Rie Johnson nee Ando, Cheng-Ju Kuo, I-Fang Chung, Chun-Nan Hsu, Yu-Shi Lin, Roman Klinger, Christoph M Friedrich, Kuzman Ganchev, Manabu Torii, Hongfang Liu, Barry Haddow, Craig A Struble, Richard J Povinelli, Andreas Vlachos, William A Baumgartner Jr, Lawrence Hunter, Bob Carpenter, Richard Tzong-Han Tsai, Hong-Jie Dai, Feng Liu, Yifei Chen, Chengjie Sun, Sophia Katrenko, Pieter Adriaans, Christian Blaschke, Rafael Torres, Mariana Neves, Preslav Nakov, Anna Divoli, Manuel Maña-López, Jacinto Mata, W John Wilbur
Genome Biology 2008, 9(Suppl 2):S2 (1 September 2008)
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Research
Overview of BioCreative II gene normalization
Alexander A Morgan, Zhiyong Lu, Xinglong Wang, Aaron M Cohen, Juliane Fluck, Patrick Ruch, Anna Divoli, Katrin Fundel, Robert Leaman, Jörg Hakenberg, Chengjie Sun, Heng-hui Liu, Rafael Torres, Michael Krauthammer, William W Lau, Hongfang Liu, Chun-Nan Hsu, Martijn Schuemie, K Bretonnel Cohen, Lynette Hirschman
Genome Biology 2008, 9(Suppl 2):S3 (1 September 2008)
[Full text] [PDF] [PubMed] [Related articles] [Cited on BioMed Central]
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Research
MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data
Andrew Chatr-aryamontri, Samuel Kerrien, Jyoti Khadake, Sandra Orchard, Arnaud Ceol, Luana Licata, Luisa Castagnoli, Stefano Costa, Cathy Derow, Rachael Huntley, Bruno Aranda, Catherine Leroy, Dave Thorneycroft, Rolf Apweiler, Gianni Cesareni, Henning Hermjakob
Genome Biology 2008, 9(Suppl 2):S5 (1 September 2008)
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Software
Introducing meta-services for biomedical information extraction
Florian Leitner, Martin Krallinger, Carlos Rodriguez-Penagos, Jörg Hakenberg, Conrad Plake, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hsi-Chuan Hung, William W Lau, Calvin A Johnson, Rune Sætre, Kazuhiro Yoshida, Yan Hua Chen, Sun Kim, Soo-Yong Shin, Byoung-Tak Zhang, William A Baumgartner Jr, Lawrence Hunter, Barry Haddow, Michael Matthews, Xinglong Wang, Patrick Ruch, Frédéric Ehrler, Arzucan Özgür, Güne Erkan, Dragomir R Radev, Michael Krauthammer, ThaiBinh Luong, Robert Hoffmann, Chris Sander, Alfonso Valencia
Genome Biology 2008, 9(Suppl 2):S6 (1 September 2008)
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Research
Text mining for biology - the way forward: opinions from leading scientists
Russ B Altman, Casey M Bergman, Judith Blake, Christian Blaschke, Aaron Cohen, Frank Gannon, Les Grivell, Udo Hahn, William Hersh, Lynette Hirschman, Lars Juhl Jensen, Martin Krallinger, Barend Mons, Seán I O'Donoghue, Manuel C Peitsch, Dietrich Rebholz-Schuhmann, Hagit Shatkay, Alfonso Valencia
Genome Biology 2008, 9(Suppl 2):S7 (1 September 2008)
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Research
Concept recognition for extracting protein interaction relations from biomedical text
William A Baumgartner Jr, Zhiyong Lu, Helen L Johnson, J Gregory Caporaso, Jesse Paquette, Anna Lindemann, Elizabeth K White, Olga Medvedeva, K Bretonnel Cohen, Lawrence Hunter
Genome Biology 2008, 9(Suppl 2):S9 (1 September 2008)
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Research
OntoGene in BioCreative II
Fabio Rinaldi, Thomas Kappeler, Kaarel Kaljurand, Gerold Schneider, Manfred Klenner, Simon Clematide, Michael Hess, Jean-Marc von Allmen, Pierre Parisot, Martin Romacker, Therese Vachon
Genome Biology 2008, 9(Suppl 2):S13 (1 September 2008)
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