Articles
Volume 9 Supplement 2
The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge
Proceedings
The BioCreative II - Critical Assessment for Information Extraction in Biology Challenge
Madrid, Spain
23-25 April 2007
Edited by Lynette Hirschman, Martin Krallinger, John Wilbur and Alfonso Valencia
|
Research
Martin Krallinger, Alexander Morgan, Larry Smith, Florian Leitner, Lorraine Tanabe, John Wilbur, Lynette Hirschman, Alfonso Valencia Genome Biology 2008, 9(Suppl 2):S1 (1 September 2008) |
|
Research
Overview of BioCreative II gene mention recognition Larry Smith, Lorraine K Tanabe, Rie Ando, Cheng-Ju Kuo, I-Fang Chung, Chun-Nan Hsu, Yu-Shi Lin, Roman Klinger, Christoph M Friedrich, Kuzman Ganchev, Manabu Torii, Hongfang Liu, Barry Haddow, Craig A Struble, Richard J Povinelli, Andreas Vlachos, William A Baumgartner, Lawrence Hunter, Bob Carpenter, Richard Tsai, Hong-Jie Dai, Feng Liu, Yifei Chen, Chengjie Sun, Sophia Katrenko, Pieter Adriaans, Christian Blaschke, Rafael Torres, Mariana Neves, Preslav Nakov, Anna Divoli, Manuel Maña-López, Jacinto Mata, W John Wilbur et al. Genome Biology 2008, 9(Suppl 2):S2 (1 September 2008) |
|
Research
Overview of BioCreative II gene normalization Alexander A Morgan, Zhiyong Lu, Xinglong Wang, Aaron M Cohen, Juliane Fluck, Patrick Ruch, Anna Divoli, Katrin Fundel, Robert Leaman, Jörg Hakenberg, Chengjie Sun, Heng-hui Liu, Rafael Torres, Michael Krauthammer, William W Lau, Hongfang Liu, Chun-Nan Hsu, Martijn Schuemie, K Bretonnel Cohen, Lynette Hirschman Genome Biology 2008, 9(Suppl 2):S3 (1 September 2008) |
|
Research
Overview of the protein-protein interaction annotation extraction task of BioCreative II Martin Krallinger, Florian Leitner, Carlos Rodriguez-Penagos, Alfonso Valencia Genome Biology 2008, 9(Suppl 2):S4 (1 September 2008) |
|
Research
Andrew Chatr-aryamontri, Samuel Kerrien, Jyoti Khadake, Sandra Orchard, Arnaud Ceol, Luana Licata, Luisa Castagnoli, Stefano Costa, Cathy Derow, Rachael Huntley, Bruno Aranda, Catherine Leroy, Dave Thorneycroft, Rolf Apweiler, Gianni Cesareni, Henning Hermjakob Genome Biology 2008, 9(Suppl 2):S5 (1 September 2008) |
|
Software
Introducing meta-services for biomedical information extraction Florian Leitner, Martin Krallinger, Carlos Rodriguez-Penagos, Jörg Hakenberg, Conrad Plake, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tsai, Hsi-Chuan Hung, William W Lau, Calvin A Johnson, Rune Sætre, Kazuhiro Yoshida, Yan Chen, Sun Kim, Soo-Yong Shin, Byoung-Tak Zhang, William A Baumgartner, Lawrence Hunter, Barry Haddow, Michael Matthews, Xinglong Wang, Patrick Ruch, Frédéric Ehrler, Arzucan Özgür, Güneş Erkan, Dragomir R Radev, Michael Krauthammer, ThaiBinh Luong, Robert Hoffmann, Chris Sander, Alfonso Valencia et al. Genome Biology 2008, 9(Suppl 2):S6 (1 September 2008) |
|
Research
Text mining for biology - the way forward: opinions from leading scientists Russ B Altman, Casey M Bergman, Judith Blake, Christian Blaschke, Aaron Cohen, Frank Gannon, Les Grivell, Udo Hahn, William Hersh, Lynette Hirschman, Lars Jensen, Martin Krallinger, Barend Mons, Seán I O'Donoghue, Manuel C Peitsch, Dietrich Rebholz-Schuhmann, Hagit Shatkay, Alfonso Valencia Genome Biology 2008, 9(Suppl 2):S7 (1 September 2008) |
|
Review
Martin Krallinger, Alfonso Valencia, Lynette Hirschman Genome Biology 2008, 9(Suppl 2):S8 (1 September 2008) |
|
Research
Concept recognition for extracting protein interaction relations from biomedical text William A Baumgartner, Zhiyong Lu, Helen L Johnson, J Gregory Caporaso, Jesse Paquette, Anna Lindemann, Elizabeth K White, Olga Medvedeva, K Bretonnel Cohen, Lawrence Hunter Genome Biology 2008, 9(Suppl 2):S9 (1 September 2008) |
|
Research
Automating curation using a natural language processing pipeline Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjov, Ewan Klein, Michael Matthews, Richard Tobin, Xinglong Wang Genome Biology 2008, 9(Suppl 2):S10 (1 September 2008) |
|
Research
Alaa Abi-Haidar, Jasleen Kaur, Ana Maguitman, Predrag Radivojac, Andreas Rechtsteiner, Karin Verspoor, Zhiping Wang, Luis M Rocha Genome Biology 2008, 9(Suppl 2):S11 (1 September 2008) |
|
Research
Mining physical protein-protein interactions from the literature Minlie Huang, Shilin Ding, Hongning Wang, Xiaoyan Zhu Genome Biology 2008, 9(Suppl 2):S12 (1 September 2008) |
|
Research
Fabio Rinaldi, Thomas Kappeler, Kaarel Kaljurand, Gerold Schneider, Manfred Klenner, Simon Clematide, Michael Hess, Jean-Marc von Allmen, Pierre Parisot, Martin Romacker, Therese Vachon Genome Biology 2008, 9(Suppl 2):S13 (1 September 2008) |
|
Research
Gene mention normalization and interaction extraction with context models and sentence motifs Jörg Hakenberg, Conrad Plake, Loic Royer, Hendrik Strobelt, Ulf Leser, Michael Schroeder Genome Biology 2008, 9(Suppl 2):S14 (1 September 2008) |
