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	1.	Research Intraspecific variation of recombination rate in maize Eva Bauer, Matthieu Falque, Hildrun Walter, Cyril Bauland, Christian Camisan, Laura Campo, Nina Meyer, Nicolas Ranc, Renaud Rincent, Wolfgang Schipprack, Thomas Altmann, Pascal Flament, Albrecht E Melchinger, Monica Menz, Jesús Moreno-González, Milena Ouzunova, Pedro Revilla, Alain Charcosset, Olivier C Martin, Chris-Carolin Schön Genome Biology 2013, 14:R103 (19 September 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A large-scale analysis of recombination rates between 22 European maize inbred lines reveals significant differences in recombination between populations
	2.	Review From pathogen genomes to host plant processes: the power of plant parasitic oomycetes Marina Pais, Joe Win, Kentaro Yoshida, Graham J Etherington, Liliana M Cano, Sylvain Raffaele, Mark J Banfield, Alex Jones, Sophien Kamoun, Diane GO Saunders Genome Biology 2013, 14:211 (28 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Saunders, Kamoun & co review recent genomics insights into plant parasitic oomycete effector function and plant host responses
	3.	Editorial Plant genomics: sowing the seeds of success Gemma D Bilsborough Genome Biology 2013, 14:404 (28 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Genome Biology's Special Issue Editor, Gemma Bilsborough, gives an overview of our plant genomics issue
	4.	Review Biofuel and energy crops: high-yield Saccharinae take center stage in the post-genomics era Savio de Siqueira Ferreira, Milton Nishiyama, Andrew H Paterson, Glaucia Souza Genome Biology 2013, 14:210 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A Review of developments in our ability to improve desirable traits in biofuel and energy crops
	5.	Opinion Gene regulatory networks in plants: learning causality from time and perturbation Gabriel Krouk, Jesse Lingeman, Amy Colon, Gloria Coruzzi, Dennis Shasha Genome Biology 2013, 14:123 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Opinion: how are systems biology approaches being utilized to model causality in gene regulatory networks?
	6.	Editorial Turning over a new leaf in plant genomics Mario Caccamo, Erich Grotewold Genome Biology 2013, 14:403 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Mario Caccamo and Erich Grotewold, Guest Editors of Genome Biology's special issue, discuss why plant genomics is such a hot topic
	7.	Meeting report Plant genomics: from weed to wheat Kerstin Kaufmann, Wolfgang Busch Genome Biology 2013, 14:308 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A report on the first 'Plant Genomics Congress' meeting, held in London, UK, 12-13 May 2013.
	8.	Research highlight A conifer genome spruces up plant phylogenomics Pamela S Soltis, Douglas E Soltis Genome Biology 2013, 14:122 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Pam and Doug Soltis highlight the sequencing of the Norway Spruce genome, and how this has shed light on gymnosperm evolution
	9.	Research Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production Carrie S Thurber, Justin M Ma, Race H Higgins, Patrick J Brown Genome Biology 2013, 14:R68 (26 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Comprehensive marker coverage of sorghum conversion lines and their progenitors allows identification of candidate loci regulating agronomic traits of interest
	10.	Review The plant microbiome Thomas R Turner, Euan K James, Philip S Poole Genome Biology 2013, 14:209 (25 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Philip Poole and colleagues discuss how genomics approaches are unraveling the complex interactions between plant hosts and microbiome communities
	11.	Opinion Interactions of beneficial and detrimental root-colonizing filamentous microbes with plant hosts Thomas Rey, Sebastian Schornack Genome Biology 2013, 14:121 (25 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary An Opinion describing the similarities and differences in how plants respond to symbiotic and parasitic microbes
	12.	Research *Mapping gene activity of Arabidopsis* root hairs** Ping Lan, Wenfeng Li, Wen-Dar Lin, Simonetta Santi, Wolfgang Schmidt Genome Biology 2013, 14:R67 (25 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Analysis of gene and protein expression in protoplasts derived from root hairs or non-root hair cells in Arabidopsis
	13.	Research Separating homeologs by phasing in the tetraploid wheat transcriptome Ksenia V Krasileva, Vince Buffalo, Paul Bailey, Stephen Pearce, Sarah Ayling, Facundo Tabbita, Marcelo Soria, Shichen Wang, Iwgs Consortium, Eduard Akhunov, Cristobal Uauy, Jorge Dubcovsky Genome Biology 2013, 14:R66 (25 June 2013) Abstract \| Provisional PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A novel transcriptome assembly pipeline that separates merged homeologs allows assembly of the tetraploid wheat transcriptome
	14.	Research *Thermal stress effects on grain yield in Brachypodium distachyon* occur via H2A.Z-nucleosomes** Scott A Boden, Monika Kavanová, E Finnegan, Philip A Wigge Genome Biology 2013, 14:R65 (25 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Repressing H2A.Z-nucleosome deposition phenocopies stress effects of higher temperatures on Brachypodium distachyon grain development
	15.	Research A high density physical map of chromosome 1BL supports evolutionary studies, map-based cloning and sequencing in wheat Romain Philippe, Etienne Paux, Isabelle Bertin, Pierre Sourdille, Fréderic Choulet, Christel Laugier, Hana Šimková, Jan Šafář, Arnaud Bellec, Sonia Vautrin, Zeev Frenkel, Federica Cattonaro, Federica Magni, Simone Scalabrin, Mihaela M Martis, Klaus FX Mayer, Abraham Korol, Hélène Bergès, Jaroslav Doležel, Catherine Feuillet Genome Biology 2013, 14:R64 (25 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The physical map of wheat chromosome 1BL allows analysis of grass gene evolution and will aid wheat breeding
	16.	Review The circadian clock goes genomic Dorothee Staiger, Jieun Shin, Mikael Johansson, Seth J Davis Genome Biology 2013, 14:208 (24 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Seth Davis and colleagues review how comparative genomics approaches have advanced our understanding of regulation of the circadian clock in plants
	17.	Review The promise of genomics in the study of plant-pollinator interactions Elizabeth L Clare, Florian P Schiestl, Andrew R Leitch, Lars Chittka Genome Biology 2013, 14:207 (24 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Lars Chittka and colleagues review current advances in understanding the genetic basis of plant-pollinator interactions
	18.	Opinion Open access to tree genomes: the path to a better forest David B Neale, Charles H Langley, Steven L Salzberg, Jill L Wegrzyn Genome Biology 2013, 14:120 (24 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary David Neale, Steven Salzberg and colleagues share their view on the need for a better open access infrastructure in tree genomics
	19.	Review Genomics reveals new landscapes for crop improvement Michael W Bevan, Cristobal Uauy Genome Biology 2013, 14:206 (24 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Mike Bevan reviews how genomic approaches are being used to accelerate and improve crop breeding
	20.	Research Analyzing the soybean transcriptome during autoregulation of mycorrhization identifies the transcription factors GmNF-YA1a/b as positive regulators of arbuscular mycorrhization Sara Schaarschmidt, Peter M Gresshoff, Bettina Hause Genome Biology 2013, 14:R62 (18 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A transcriptomic analysis of changes in soybean gene expression in response to mycorrhization identifies GmNF-YA1a/b as positive regulators of arbuscular mycorrhization
	21.	Method User guide for mapping-by-sequencing in Arabidopsis Geo James, Vipul Patel, Karl JV Nordström, Jonas R Klasen, Patrice A Salomé, Detlef Weigel, Korbinian Schneeberger Genome Biology 2013, 14:R61 (17 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| f1000 \| Editor’s summary Method for mapping-by-sequencing in Arabidopsis, using the Pop-seq software, and application to barley and rice as well
	22.	Research Reference genomes and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis Nicolas Sierro, James ND Battey, Sonia Ouadi, Lucien Bovet, Simon Goepfert, Nicolas Bakaher, Manuel C Peitsch, Nikolai V Ivanov Genome Biology 2013, 14:R60 (17 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Genome sequencing and transcriptomes of Nicotiana sylvestris and Nicotiana tomentosiformis show that differences in alkaloid production may regulate insect resistance
	23.	Research *Hyperosmotic priming of Arabidopsis* seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome** Emanuela Sani, Pawel Herzyk, Giorgio Perrella, Vincent Colot, Anna Amtmann Genome Biology 2013, 14:R59 (14 June 2013) Abstract \| Full text \| PDF \| PubMed \| f1000 \| Editor’s summary Exposure of young seedlings to salt stress causes histone modifications and transcriptional changes, enhancing stress tolerance in mature plants
	24.	Research Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome María Muñoz-Amatriaín, Steven R Eichten, Thomas Wicker, Todd A Richmond, Martin Mascher, Burkhard Steuernagel, Uwe Scholz, Ruvini Ariyadasa, Manuel Spannagl, Thomas Nussbaumer, Klaus FX Mayer, Stefan Taudien, Matthias Platzer, Jeffrey A Jeddeloh, Nathan M Springer, Gary J Muehlbauer, Nils Stein Genome Biology 2013, 14:R58 (12 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary An analysis of copy number variations in 14 barley genomes shows that DNA repair and template slippage may have caused variations
	25.	Research Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids Guangming He, Beibei Chen, Xuncheng Wang, Xueyong Li, Jigang Li, Hang He, Mei Yang, Lu Lu, Yijun Qi, Xiping Wang, Xing Wang Deng Genome Biology 2013, 14:R57 (12 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary An analysis of the effect of genotype and tissue type on transcriptional and epigenetic changes in maize inbred lines and hybrids