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	1.	Review From pathogen genomes to host plant processes: the power of plant parasitic oomycetes Marina Pais, Joe Win, Kentaro Yoshida, Graham J Etherington, Liliana M Cano, Sylvain Raffaele, Mark J Banfield, Alex Jones, Sophien Kamoun, Diane GO Saunders Genome Biology 2013, 14:211 (28 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Saunders, Kamoun & co review recent genomics insights into plant parasitic oomycete effector function and plant host responses
	2.	Review Biofuel and energy crops: high-yield Saccharinae take center stage in the post-genomics era Savio de Siqueira Ferreira, Milton Nishiyama, Andrew H Paterson, Glaucia Souza Genome Biology 2013, 14:210 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A Review of developments in our ability to improve desirable traits in biofuel and energy crops
	3.	Opinion Gene regulatory networks in plants: learning causality from time and perturbation Gabriel Krouk, Jesse Lingeman, Amy Colon, Gloria Coruzzi, Dennis Shasha Genome Biology 2013, 14:123 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Opinion: how are systems biology approaches being utilized to model causality in gene regulatory networks?
	4.	Editorial Turning over a new leaf in plant genomics Mario Caccamo, Erich Grotewold Genome Biology 2013, 14:403 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Mario Caccamo and Erich Grotewold, Guest Editors of Genome Biology's special issue, discuss why plant genomics is such a hot topic
	5.	Meeting report Plant genomics: from weed to wheat Kerstin Kaufmann, Wolfgang Busch Genome Biology 2013, 14:308 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A report on the first 'Plant Genomics Congress' meeting, held in London, UK, 12-13 May 2013.
	6.	Research highlight A conifer genome spruces up plant phylogenomics Pamela S Soltis, Douglas E Soltis Genome Biology 2013, 14:122 (27 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Pam and Doug Soltis highlight the sequencing of the Norway Spruce genome, and how this has shed light on gymnosperm evolution
	7.	Review The plant microbiome Thomas R Turner, Euan K James, Philip S Poole Genome Biology 2013, 14:209 (25 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Philip Poole and colleagues discuss how genomics approaches are unraveling the complex interactions between plant hosts and microbiome communities
	8.	Opinion Interactions of beneficial and detrimental root-colonizing filamentous microbes with plant hosts Thomas Rey, Sebastian Schornack Genome Biology 2013, 14:121 (25 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary An Opinion describing the similarities and differences in how plants respond to symbiotic and parasitic microbes
	9.	Research Separating homeologs by phasing in the tetraploid wheat transcriptome Ksenia V Krasileva, Vince Buffalo, Paul Bailey, Stephen Pearce, Sarah Ayling, Facundo Tabbita, Marcelo Soria, Shichen Wang, Iwgs Consortium, Eduard Akhunov, Cristobal Uauy, Jorge Dubcovsky Genome Biology 2013, 14:R66 (25 June 2013) Abstract \| Provisional PDF \| PubMed \| Editor’s summary A novel transcriptome assembly pipeline that separates merged homeologs allows assembly of the tetraploid wheat transcriptome
	10.	Review The circadian clock goes genomic Dorothee Staiger, Jieun Shin, Mikael Johansson, Seth J Davis Genome Biology 2013, 14:208 (24 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary Seth Davis and colleagues review how comparative genomics approaches have advanced our understanding of regulation of the circadian clock in plants
	11.	Review The promise of genomics in the study of plant-pollinator interactions Elizabeth L Clare, Florian P Schiestl, Andrew R Leitch, Lars Chittka Genome Biology 2013, 14:207 (24 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Lars Chittka and colleagues review current advances in understanding the genetic basis of plant-pollinator interactions
	12.	Opinion Open access to tree genomes: the path to a better forest David B Neale, Charles H Langley, Steven L Salzberg, Jill L Wegrzyn Genome Biology 2013, 14:120 (24 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| 1 comment \| Editor’s summary David Neale, Steven Salzberg and colleagues share their view on the need for a better open access infrastructure in tree genomics
	13.	Review Genomics reveals new landscapes for crop improvement Michael W Bevan, Cristobal Uauy Genome Biology 2013, 14:206 (24 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary Mike Bevan reviews how genomic approaches are being used to accelerate and improve crop breeding
	14.	Research *Hyperosmotic priming of Arabidopsis* seedlings establishes a long-term somatic memory accompanied by specific changes of the epigenome** Emanuela Sani, Pawel Herzyk, Giorgio Perrella, Vincent Colot, Anna Amtmann Genome Biology 2013, 14:R59 (14 June 2013) Abstract \| Full text \| PDF \| PubMed \| F1000 Biology \| Editor’s summary Exposure of young seedlings to salt stress causes histone modifications and transcriptional changes, enhancing stress tolerance in mature plants
	15.	Research Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids Guangming He, Beibei Chen, Xuncheng Wang, Xueyong Li, Jigang Li, Hang He, Mei Yang, Lu Lu, Yijun Qi, Xiping Wang, Xing Wang Deng Genome Biology 2013, 14:R57 (12 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary An analysis of the effect of genotype and tissue type on transcriptional and epigenetic changes in maize inbred lines and hybrids
	16.	Research highlight Plastic, fantastic! Phenotypic variance in the transcriptional landscape of the grape berry Alisdair R Fernie, Takayuki Tohge Genome Biology 2013, 14:119 (7 June 2013) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A Research Highlight covering Mario Pezzotti's research article analyzing the plasticity of grape berrys in response to environmental changes
	17.	Research The plasticity of the grapevine berry transcriptome Silvia Dal Santo, Giovanni Tornielli, Sara Zenoni, Marianna Fasoli, Lorenzo Farina, Andrea Anesi, Flavia Guzzo, Massimo Delledonne, Mario Pezzotti Genome Biology 2013, 14:r54 (7 June 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A transcriptomic and metabolomic analysis of the plasticity of grapevine berry gene expression in response to development and the environment
	18.	Research The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color Juan C Motamayor, Keithanne Mockaitis, Jeremy Schmutz, Niina Haiminen, Donald Livingstone, Omar Cornejo, Seth D Findley, Ping Zheng, Filippo Utro, Stefan Royaert, Christopher Saski, Jerry Jenkins, Ram Podicheti, Meixia Zhao, Brian E Scheffler, Joseph C Stack, Frank A Feltus, Guiliana M Mustiga, Freddy Amores, Wilbert Phillips, Jean Philippe Marelli, Gregory D May, Howard Shapiro, Jianxin Ma, Carlos D Bustamante, Raymond J Schnell, Dorrie Main, Don Gilbert, Laxmi Parida, David N Kuhn Genome Biology 2013, 14:R53 (3 June 2013) Abstract \| Provisional PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary The genome sequence of Theobroma cacao Matina 1-6 allows the identification of a gene associated with pod color
	19.	Research Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.) Ray Ming, Robert VanBuren, Yanling Liu, Mei Yang, Yuepeng Han, Lei-Ting Li, Qiong Zhang, Min-Jeong Kim, Michael C Schatz, Michael Campbell, Jingping Li, John E Bowers, Haibao Tang, Eric Lyons, Ann A Ferguson, Giuseppe Narzisi, David R Nelson, Crysten E Blaby-Haas, Andrea R Gschwend, Yuannian Jiao, Joshua P Der, Fanchang Zeng, Jennifer Han, Xiang Jia Min, Karen A Hudson, Ratnesh Singh, Aleel K Grennan, Steven J Karpowicz, Jennifer R Watling, Kikukatsu Ito et al. Genome Biology 2013, 14:R41 (10 May 2013) Abstract \| Provisional PDF \| PubMed \| Cited on BioMed Central \| F1000 Biology \| Editor’s summary The genome of the long-living, slowly evolving sacred lotus reveals the genetic mechanisms underlying its adaptation to limited nutrient availability
	20.	Meeting report Food for thought from plant and animal genomes Emily Abrash Genome Biology 2013, 14:302 (27 February 2013) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary A report on the Plant and Animal Genome XXI meeting, held in San Diego, USA, January 12-16, 2013.
	21.	Research *Natural variation of H3K27me3 distribution between two Arabidopsis* accessions and its association with flanking transposable elements** Xue Dong, Julia Reimer, Ulrike Göbel, Julia Engelhorn, Fei He, Heiko Schoof, Franziska Turck Genome Biology 2012, 13:R117 (19 December 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary An analysis of natural variation of H3K27me3 in 2 Arabidopsis thaliana accessions and in their F1 hybrids
	22.	Meeting report International plant molecular biology: a bright future for green science Sibum Sung, Enamul Huq, Z Jeffrey Chen Genome Biology 2012, 13:323 (19 November 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A report on the 10th International Congress of Plant Molecular Biology, Jeju, South Korea, October 21-26, 2012.
	23.	Meeting report Strategies towards sequencing complex crop genomes James C Abbott, Sarah A Butcher Genome Biology 2012, 13:322 (19 November 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary A report on the Strategies for de novo assemblies of complex crop genomes workshop held at The Genome Analysis Centre, Norwich, UK, 8-10 October 2012.
	24.	Research Contribution of the epigenetic mark H3K27me3 to functional divergence after whole genome duplication in Arabidopsis Lidija Berke, Gabino F Sanchez-Perez, Berend Snel Genome Biology 2012, 13:R94 (3 October 2012) Abstract \| Full text \| PDF \| PubMed \| Cited on BioMed Central \| Editor’s summary H3K27me3 is linked to lower expression divergence yet higher coding sequence divergence following Arabidopsis thaliana's recent whole genome duplication
	25.	Opinion The tomato genome: implications for plant breeding, genomics and evolution Aashish Ranjan, Yasunori Ichihashi, Neelima R Sinha Genome Biology 2012, 13:167 (30 August 2012) Abstract \| Full text \| PDF \| PubMed \| Editor’s summary The importance of the tomato genome for plant breeding and the future of crop research